Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele43g1181 ATGTCTGTGGGCTTCTTCTTCTTCTTATTATGCCTAATTACCCTAACTACAGAGTCTGCAACTGTAATAGAAGGTGGAAGAAGAAGAATCCCCCCTGTAGATATACCAGTAGGAGTGATGCTGGATTTGAATTCATCACTTGGTGACATGGCTCTCAACTGCACCAACATCGCACTCCAAGATTTCTATTCCACTCATGCTTCCTATTCAACCAAGCTCCAACTTCATTTCAATCATTCTGGAAACGATCTCCTTACTGCAGATTCTGTAGCTTTGGATCTCATAAGTAATAAAAAGGTGCGTGCAATCCTGGGACCTCAAAACTCAGAGCAAGCAAGGTATGTTGTAGAACTTGGTTACAAGTATGATGTTCCTGTGATTTGGTTTTCTCCTTCTGGTCCTTCTCTGTCGCCACCCCGTTCCCGATTCTTCATAAACTCCTACTCCATTAGAAGCCACTGCTTTCAGTTCAGAGCTATAGCAGCCATTATAGAAGCTTATAATTGGCAGTCTGTGATTCCCATTTATGAAGAGCCAGAATTCGGCAATGACTTAATCCCGTGTCTCACTTATGCCCTGCAAGACATGGACACTCGAATGCCTTACATAAGTCCCATGAGTCAAAGCTTCAAGGATGATCAAATCACCGAAGAGCTTAACAAGATCAAAGAGAAGAGAACATATGTGTTTATTGTCCATATGACAGTGGAGCTTTGGTCAAGACTTGTGGAACAAGCACAAAAGGCAGGGATGATGAGTGAAGGATACGCTTGGGTACTTACACAAGACCTATCTTCTGTGATGGATCCTGAAGCTATGGATATAAAAATGAAAGGCTTCATGGATGGTGCTTTGGGTGTGAGACCATCATTGGTTGTTCCCTACAAAACTAAACTTGAGCGCGTTTCCTTAGCGAGATCATTACTGAAGTACCATAAAACTCTCTCTCTATATGGCTTGTGGGCTTATGACACTATCACAGCATTGGCCAAAGCGGTAGAGAATGCCAGCTTTGTCAATTCTAATGAAAGCGGAGTTGATCTTCGTAAAGCAATTAAGGATACTAATTTCGCAGGCCTGTCAGGGAATTTCAGTTTGAGTCAAGGACAACTACAACCATCAAAAGTTGTAGTATACAATGTGGAAGACCAGAGAGAAAACATCATTGGATATTGGAAACCCGGAAGAGGACTTTATCAAAATGACAGTGTAATTAATGGACCACCTGGTACATACCAACTAAGGGATCCAATGTGGCCGGGTAACACAAAGGAGAGACCACCAAAGTTGAAAATTGGGGTCCCAAAAGGGCTTTTTACCGAATTTGTTAATGTTACTTTAGATGGAAAGAGTACTGGCTTTGCTATTGATGTGTTTAACAAAGTGCTTGAAGTTTTGCCATTTAAATTATCTTATGTGTTTGTGCCCCTGAACAACACTAAGGGAGAGTTGACTCCCTTTAGATATGATGATCTTCTCTGCAATATCTCCAGCAAGGAACTTGATGTTGATGTTATAATTGGAGACATTACAATTGTAGTGAATCGCACAGGATGTGTTGATTTCACAATGCCGTATTTAGATTCAAGCGTGTCGATGGTGTTAAAGGTGAGGTCCGACGGCAAAAGTAGGGGGATCCTGTTCAAGCCTTTTCATTGGTCACTTTGGTTAATTCTTGGTGTGATCTTTGTGGGTGCCACTGTTATCGTATTTATATTGGAAAGGAAAAAAAACCGCGATGATGGTGAAAGCAAATTCAACCGCGATGAAGGTGAAAGCAAATTCAACCGCGATGATGGTGAAAGCAAATTCAACCGCGATGAAGGTGAAAGCAAATTCAACCGCGATGATGGTGAAAGCAAATTCAACAGCAATGATGGTGAAAGCAAATTCAAACGCTTTGTCCACAATCCCTTCCTTATTTACTTGAGCGATGTTGGGAATTTGAGTGATAAGACATCTAAATGGGTGGTGATAGTGGTGATGTTTCTCTTGGGCGTAGCATTGCAAGTTTACACGGCAAATTTGACATCATTTTTAAATGAGAGGACAATGGCAAAGCCTCCTCCATGGAAGGACGTGCAAGAGATTAAAAGGAACAATAAGGCAGTGGGATATCAAAGCGATTCCTGGGTGAAACACCTTCTGCTCCAAATAGGATTGAAGGAAGAACAATTGAGGCCTTTAGGAAGTCGTCAAGATTACATGGAAGCATTATTTAAAGAAGACAATGATGAACGACGAGTGGATGTTATTTTTGATGAAACTCCTTATCTCACGCTCTTGCTTAACGAATGCGATTCTTGCAAGATGACAGGACCAATCTACAAAGCTGGTGGATTTGGATTTGCTTTTCCGAAGAATTCTACCTTGGTCTCGAATTTTTCAGCTGCAATATTAAATGTGACTCAAAATGTTGCGAAGTTTCGTGACATGAAGAACAAAATATCTTTAACCGTCAGCATTGACAAATCCGAATTCAAAAGCGATGTTGAGACGCGAGGTTTGACTATAGAGGACTTTGGAGGTCTTTTCATAATAGTATTGATTGTTTTAGTTCTCTTCATCACCTTTTCAGTTCTTAAAGTTACATCGTTCGTTGTCTGGTTGCATAACAAATTTGTTTCATTCCTAAGTCCCTCCGGTGGAGTTATATTAATTAAACGCTAG 2670 0.4079 MSVGFFFFLLCLITLTTESATVIEGGRRRIPPVDIPVGVMLDLNSSLGDMALNCTNIALQDFYSTHASYSTKLQLHFNHSGNDLLTADSVALDLISNKKVRAILGPQNSEQARYVVELGYKYDVPVIWFSPSGPSLSPPRSRFFINSYSIRSHCFQFRAIAAIIEAYNWQSVIPIYEEPEFGNDLIPCLTYALQDMDTRMPYISPMSQSFKDDQITEELNKIKEKRTYVFIVHMTVELWSRLVEQAQKAGMMSEGYAWVLTQDLSSVMDPEAMDIKMKGFMDGALGVRPSLVVPYKTKLERVSLARSLLKYHKTLSLYGLWAYDTITALAKAVENASFVNSNESGVDLRKAIKDTNFAGLSGNFSLSQGQLQPSKVVVYNVEDQRENIIGYWKPGRGLYQNDSVINGPPGTYQLRDPMWPGNTKERPPKLKIGVPKGLFTEFVNVTLDGKSTGFAIDVFNKVLEVLPFKLSYVFVPLNNTKGELTPFRYDDLLCNISSKELDVDVIIGDITIVVNRTGCVDFTMPYLDSSVSMVLKVRSDGKSRGILFKPFHWSLWLILGVIFVGATVIVFILERKKNRDDGESKFNRDEGESKFNRDDGESKFNRDEGESKFNRDDGESKFNSNDGESKFKRFVHNPFLIYLSDVGNLSDKTSKWVVIVVMFLLGVALQVYTANLTSFLNERTMAKPPPWKDVQEIKRNNKAVGYQSDSWVKHLLLQIGLKEEQLRPLGSRQDYMEALFKEDNDERRVDVIFDETPYLTLLLNECDSCKMTGPIYKAGGFGFAFPKNSTLVSNFSAAILNVTQNVAKFRDMKNKISLTVSIDKSEFKSDVETRGLTIEDFGGLFIIVLIVLVLFITFSVLKVTSFVVWLHNKFVSFLSPSGGVILIKR 889
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele43g1181 889 Gene3D - 43 374 - -
Lele43g1181 889 Gene3D - 152 394 - -
Lele43g1181 889 Gene3D - 426 546 - -
Lele43g1181 889 SUPERFAMILY Periplasmic binding protein-like II 427 805 - -
Lele43g1181 889 Pfam Ligand-gated ion channel 806 851 IPR001320 GO:0015276|GO:0016020
Lele43g1181 889 SMART GluR_14 431 814 IPR001320 GO:0015276|GO:0016020
Lele43g1181 889 SUPERFAMILY Periplasmic binding protein-like I 34 428 IPR028082 -
Lele43g1181 889 MobiDBLite consensus disorder prediction 581 624 - -
Lele43g1181 889 Pfam Receptor family ligand binding region 55 382 IPR001828 -
Lele43g1181 889 Gene3D - 547 714 - -
Lele43g1181 889 Pfam Bacterial extracellular solute-binding proteins, family 3 442 805 IPR001638 -
Lele43g1181 889 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 37 859 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele43g1181 Lele-ChrLele43 20148216 20152178 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele43g1181 5 815 Ion Channels AT2G29120 32.471 4.92e-121 388