LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele43g1180	ATGAATAATTTTACTCCTTCTATGAGCATCACAGCAAGACTTTCCATGGCGGCCCCAAAAAATGTAACAGTAGGAGTCATCCTTGATCTGGATTCAGCACTTGGTAAAATGGTGAACAACAGCCTCCACTTCGCTGTCGAAAATTACTATTCCAATCATACCAATACAACCACCAAGATCAGCCTTATAGTCCAGCATGTTTCTCAGGATGACGTCGTAGGCGCGGCACAAAAAGCAGCTTTTGATCTAATAAAGAATGAAACGGTGCGTGCCATCTTGGGTCCCCAGAATTCAGAGCAAGCACGGTTTATAGTTCAACTTGGTAATAAATTCCAAGTACCAGTTATTTGGTTTCCCCTAACCGGTCCTTCTCTTCTTCCACCTCCTTCCCCATCCTCCGATAAAGGCCTTAATTGCTATCAGTTCCACGCCATAGCCGACACTATTAAAGCTCTTGGCTGGCAATCAATCGTCCCCATTTATGAACAAACTGAATATGGCAGCCACCTTATTCCATGCCTCACCAATGTCTTGAAAGCTATGGGCATTCAAATGACTAACGTCACTTCCATTGATTCATCAAATTCAGAAAATCTTGGACTTATTAACGACACTCTCGACGAGCTAAACAGAATGCGAACACATGCATTTCTTGTCCATATGAGCAGGGATTTCGGAGCAAGATTTATAAAGTCTGCACAAGAAAGAGATATGATGGATGAAGGATATGCTTGGATACTTACCCAAGGGCTATCTTCTTTGACAGATCCTAGAGTTCCAGTCCAGAGAAAATTGTATTATCCCGATCAAACATTTGAATATTTTACTGATCATGTTCGTTTGGGAAGATTCATGCAAGGTGCATTAGGAGTGAGGCCAATGGATTCGGAGAAAACAAATGTGCGTAGAGGGATTGAGAGGAACTTCACCGGTAAGTTCAATAGTGTTCTAACTATCTATGGATGGTGGGCTTATCACACACTCGAAGCTTTGGCTATGGCGGTAGAGAAGGCAGGCACTGAAATAAAGGGCACAAAACTTCGCAGTGAAATTCAGGCTACTATTTTGACAGGCGATTCAGGGGTGAAGTTTAATTTGAGTAATGGGCAACTAGATCAACCGGAGCTTGAAGTTTACAATGTGATAGGAGAAAGAGAAAGGATCATAGGATCTTGGAACCCTGAAACTCGACTTGCTCAGAATTTTAGTGAAGGTGGTGAGACATCTGGTGAATACCCACTAAAGGATCCAATGTGGCCGGGTGACACATTGGATAAACCCCCAAAGTTGAGAATTGGAGTGCCAAGGACAAATTCTTTTCCTGAATTTGTGAATGTAGATTTATATAATTCTAGTAAACCGCTGATTTATGGCTTTGCTATTAATGTGTTCTTAAAAGCTCTCGATCTTTTGCCATTTCCGTTAAAAAATTATGAGTTTGTTCACTTGCCAAGCAAAAGAAGCCATCCTCCCACGACCTATGATACGATTCTCTGCAGCCAAATGAAAGACGAGGATCTTGATGCTGTAATTGGAGACATCACAATTGTTCCAAAACGCACAAAATGTGTTGATTTCACGTTGCCGTATTTATATTCAAGTGTAGCAATGGTGGTAAGGGTGAAGACGTCCACGAGTAAGGGGATCCTCTTGAAACCTTTCAGTTGGTTACTATGGTTAATTCTTGGTGGAATTTTTGTGGGTGCAACTATTGTCATAATTATATTAGAAAGAAACAAAACCAATAACGAAGGAAACAACAAAACCAACGAAGGAAGCAAAACCGACAAATTTCGCTTCAAAAACCCCTTCCTTGTTTACAAGATCGATGTTCTGGAGTTTGGAAGCAGATCTGCAGGATGGATGGTGATACTGACGTCATTCCTGTTCATCCTAGTGGTGCAAGTTTACACAGCGAATTTAACTTCAGTTTTAACGCAAGGAAAAATGAGGGAGCCTTCATTTAAGGACGAAAACGATACTAAAAGCAGCAATGTGAGCGTGGGATATAGAAGTGGGTCATGGGTGAGAGAGCTTCTGATTGAACAATTAGGATTTGAGCCGTCTCGGTTAAAGGCTTTAGGAAATCGTGAAGAGTACAATGAAGCATTGTCAAATGGAACCGAAAAAGGAGGAGTGGATGCTATTTTTGATGAAACTCCTTATCTCATTCTCTTCCTCTCCAGATATAAGTCTCACTTTATGATGACTGGACCAATCTACAAAACCGGTGGATTTGCCTTTGCATTCCCAAAAAAATCTAGCTTGGCCTCGCATTTCTCGGATGCAATCTTAGATGTGACTCAAGATGTGGAGCAATATCGATCTGTTCAAGTTCACGTGGAGCTTTGGAACTGTGCCTTTACCACATAG	2373	0.4147	MNNFTPSMSITARLSMAAPKNVTVGVILDLDSALGKMVNNSLHFAVENYYSNHTNTTTKISLIVQHVSQDDVVGAAQKAAFDLIKNETVRAILGPQNSEQARFIVQLGNKFQVPVIWFPLTGPSLLPPPSPSSDKGLNCYQFHAIADTIKALGWQSIVPIYEQTEYGSHLIPCLTNVLKAMGIQMTNVTSIDSSNSENLGLINDTLDELNRMRTHAFLVHMSRDFGARFIKSAQERDMMDEGYAWILTQGLSSLTDPRVPVQRKLYYPDQTFEYFTDHVRLGRFMQGALGVRPMDSEKTNVRRGIERNFTGKFNSVLTIYGWWAYHTLEALAMAVEKAGTEIKGTKLRSEIQATILTGDSGVKFNLSNGQLDQPELEVYNVIGERERIIGSWNPETRLAQNFSEGGETSGEYPLKDPMWPGDTLDKPPKLRIGVPRTNSFPEFVNVDLYNSSKPLIYGFAINVFLKALDLLPFPLKNYEFVHLPSKRSHPPTTYDTILCSQMKDEDLDAVIGDITIVPKRTKCVDFTLPYLYSSVAMVVRVKTSTSKGILLKPFSWLLWLILGGIFVGATIVIIILERNKTNNEGNNKTNEGSKTDKFRFKNPFLVYKIDVLEFGSRSAGWMVILTSFLFILVVQVYTANLTSVLTQGKMREPSFKDENDTKSSNVSVGYRSGSWVRELLIEQLGFEPSRLKALGNREEYNEALSNGTEKGGVDAIFDETPYLILFLSRYKSHFMMTGPIYKTGGFAFAFPKKSSLASHFSDAILDVTQDVEQYRSVQVHVELWNCAFTT	790

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele43g1180	790	Pfam	Bacterial extracellular solute-binding proteins, family 3	500	772	IPR001638	-
	Lele43g1180	790	Gene3D	-	550	676	-	-
	Lele43g1180	790	SUPERFAMILY	Periplasmic binding protein-like I	17	393	IPR028082	-
	Lele43g1180	790	Pfam	Receptor family ligand binding region	39	382	IPR001828	-
	Lele43g1180	790	Gene3D	-	16	143	-	-
	Lele43g1180	790	Gene3D	-	426	549	-	-
	Lele43g1180	790	Pfam	Ligand-gated ion channel	556	653	IPR001320	GO:0015276\|GO:0016020
	Lele43g1180	790	SUPERFAMILY	Periplasmic binding protein-like II	425	770	-	-
	Lele43g1180	790	Gene3D	-	144	330	-	-
	Lele43g1180	790	PANTHER	IONOTROPIC GLUTAMATE RECEPTOR	22	770	-	-
	Lele43g1180	790	SMART	GluR_14	429	770	IPR001320	GO:0015276\|GO:0016020

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele43g1180	Lele-ChrLele43	20140033	20148023	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele43g1180	22	772	Ion Channels	AT2G29120	34.008	7.55e-116	372