Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele43g1179 ATGGAGAGAAGGCCAAGAGATTGTGTCCTATTTGTGGGCTTATTATTATGCCTAATAATTACCCTAACTGAATCTGCAACTGTAAGTATACCAGTAGGAGTGATTCTGGATTCGGATTCATCACTTGGTTCCATAGCTCTCAACTGCACAAACATCGCACTCCAAGATTTCTATTCCACACAAGATTCCAATTATACAACCAACCTCACACTTCATTTCAGGCATTCTGGAAACGATCTCCTCACTGCAGCTTTTGCAGCTTGGAATCTAATACATAATGAGAAGGTGCATGCGATACTGGGACCTCAAAACTCAGAGCAAGCAAGGCATATTGTAGAACTTGGTAACAAATATGATGTACCAGTGATTTGGTTTTCTCCATCTGGTCCTTCTCTGTTGCCTCCTCGCTCCCGTTTCTTCATCAATTCCAACTCCACCAGAAGCCATTGCCTTCAGTTCAAAGCCATAGCAGCCATTATCGAAGCTTATAATTGGCAGTCCGTGATTCCCATTTATGAAGAGCCTGAATTCGGCAATGACCTAATTCCATGTCTCACTTACGCCCTGCAAGACATGGACACTCGAGTTCCTTACATAAGTTCCATTAGTCAAAATTCCTCGGATTCTCAAATCTCCGAAGAGCTTAACAAGATAAAAGGCAAGCGAACATATGTGTTTCTTGCCCATATGACCGTGGAGCTTTGGTCAAAACTTGTGGAACAGGCACAAGATGCAGGCATGATGGGTAAAGGATACGCTTGGATACTTACGCAAGGCCTATCTTCAATGGTAGATCCCGAAGCTAAGGGTATAAAAGTGACAGGCTACATGGATGGTGCTTTAGGTGTGAGGCCCCCATTATTCGTTGCTTCCAACATAACTAATCGTTTGATTTCCTTAGCGAAAACATTAAGGAAGTACGATAAAAGTCTGTCTCTATATGGCCTGTGGGCTTATGACACTATCACAGTACTGGCCAATGCAGTAGAGAATGCCGGCATAGTCAAATATAGTCTCATCAGATATAGGAATGGAAGCAGCGTTGAAGTTGCTGATGTAGGAATGCGCTCTGAAACGGGCCCAATACTTCTCAGAGAAATTCTAAATACTGATTTCCGAGGCCTGTCGGGGAATTTCAGTTTGAGGCAAGAACAACTAGAACCATCGGAAGTTGTAATATACAATGTGAAAGGTCTAAGAGAAATCATCATGGGATATTGGAGCCCAGAGAGAGGATTTCATAATCATAGTGTAGTTGATGAACAAGCCGATAAATTCAAACTATTGGACCCGACATGGCCGGGTGACACAATGGACAGACCACCAAAGTTGAAAATCGGAGTCCCGAAAACGCATTTTACTGAATTTGTTGATGTTAGTGTAGATGGGCAGAATATATCAGCTACTGGTTTTGCTTTTGATGTGTTTAACAAAGTGGTTGAAGTTTTGCCATTTAATTTATCTTATATGCTTGTGCCCGTGGACAACACTAATGGAGAGTTGATTCCCTCGAGCTATGATGATCTTCTTTGCAACATCACAAGCAAGAATGTTGATGTTGATGTTATAATTGGAGACATTACAATTCTAAAGAGTCGCACAAAGTGTGTTGATTTCACAATGCCGTATTTAGATTCAAGCGTATCGATGGTGGTAAAGGTGAGGTCCGACGACAAAAGTGGGTGGATCCTGTTCAAGCCTTTTCATTGGTCACTTTGGTTAATTCTTGGTGTGATTTTGGTGGGTGCAACTGTTATTGTGTTTATATTGGAAAGAAAATCGAAGAAGGATCCAAATAGCAAATTCAAACTCTTTGTCCACAATCCCTTCCTTATTTACATGAGCGATGTTGAGAATTTGAGAAGTGGGACGTCCAAATGGGTGGTGATAGTGGTGATGTTTCTGTTGGGCTTAGTATTGCAAATTTACACAGCAAATTTGACGTCATTTTTAAATGAGAGGACAATGGCAAAGCCTCCTCCATGGAAGGATGTGCAAGAGATTAAAAGGAGCAATAAGTCAGTGGGATATCAAAGCGATTCCTGGGTGAAAGATCTTCTGATAAACCAAATAGGATTGAAGAAAGAACAGTTAAAGCCTTTAGGAAGTCGTGAAGATTACAAGAGAGCATTATCAAATGAAGACAGAGAAAAACGAGTGGATGCTATTTTTGATGAAACTCCTTATCTAGTGCTCTTCCTTTCCAATTGCTCTTCTTGCAAGATGACAGGACCAATCTACAAAGCTGGTGGATTTGCCTTTGCTTTTCCGAAGAATTCTACCTTGGTCTCGAATTTTTCAGCTGCAATATTACAAGTGACTCAAAATGTTACGAAGTTTCGTGACATGAAGAACAACATATCTTTGCCCATCACCATTGACAAATCAGAATTCAAAAGTGATGTTGAGACACGAGGTTTGACTATAGATGACTTTGGAGGTCTTTTCACGATAGTATTGATTGTTTTAGTTCTCTTCGTCAGCCTTTCAATTCTTAAAGTTACTTATTTCGCTGTCTGGTTGCATAACAAATTTGTATCATTCCTAAGTCCTTCCGGTGGAGTTATATTAATTAAACGCTAG 2583 0.4057 MERRPRDCVLFVGLLLCLIITLTESATVSIPVGVILDSDSSLGSIALNCTNIALQDFYSTQDSNYTTNLTLHFRHSGNDLLTAAFAAWNLIHNEKVHAILGPQNSEQARHIVELGNKYDVPVIWFSPSGPSLLPPRSRFFINSNSTRSHCLQFKAIAAIIEAYNWQSVIPIYEEPEFGNDLIPCLTYALQDMDTRVPYISSISQNSSDSQISEELNKIKGKRTYVFLAHMTVELWSKLVEQAQDAGMMGKGYAWILTQGLSSMVDPEAKGIKVTGYMDGALGVRPPLFVASNITNRLISLAKTLRKYDKSLSLYGLWAYDTITVLANAVENAGIVKYSLIRYRNGSSVEVADVGMRSETGPILLREILNTDFRGLSGNFSLRQEQLEPSEVVIYNVKGLREIIMGYWSPERGFHNHSVVDEQADKFKLLDPTWPGDTMDRPPKLKIGVPKTHFTEFVDVSVDGQNISATGFAFDVFNKVVEVLPFNLSYMLVPVDNTNGELIPSSYDDLLCNITSKNVDVDVIIGDITILKSRTKCVDFTMPYLDSSVSMVVKVRSDDKSGWILFKPFHWSLWLILGVILVGATVIVFILERKSKKDPNSKFKLFVHNPFLIYMSDVENLRSGTSKWVVIVVMFLLGLVLQIYTANLTSFLNERTMAKPPPWKDVQEIKRSNKSVGYQSDSWVKDLLINQIGLKKEQLKPLGSREDYKRALSNEDREKRVDAIFDETPYLVLFLSNCSSCKMTGPIYKAGGFAFAFPKNSTLVSNFSAAILQVTQNVTKFRDMKNNISLPITIDKSEFKSDVETRGLTIDDFGGLFTIVLIVLVLFVSLSILKVTYFAVWLHNKFVSFLSPSGGVILIKR 860
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele43g1179 860 Gene3D - 52 388 - -
Lele43g1179 860 SUPERFAMILY Periplasmic binding protein-like I 30 408 IPR028082 -
Lele43g1179 860 Gene3D - 148 413 - -
Lele43g1179 860 Gene3D - 562 685 - -
Lele43g1179 860 PIRSF IGluLR_plant 5 846 IPR017103 -
Lele43g1179 860 SMART GluR_14 445 785 IPR001320 GO:0015276|GO:0016020
Lele43g1179 860 Pfam Receptor family ligand binding region 50 397 IPR001828 -
Lele43g1179 860 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 32 831 - -
Lele43g1179 860 SUPERFAMILY Periplasmic binding protein-like II 440 776 - -
Lele43g1179 860 Pfam Bacterial extracellular solute-binding proteins, family 3 467 776 IPR001638 -
Lele43g1179 860 Gene3D - 441 561 - -
Lele43g1179 860 Pfam Ligand-gated ion channel 777 822 IPR001320 GO:0015276|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele43g1179 Lele-ChrLele43 20133967 20138905 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele43g1179 9 775 Ion Channels AT2G29120 34.509 6.02e-131 414