LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele43g1178	ATGGGACCTATAATGGCAGAGTTGCAGAAAAGCTCCAAAGCTTCTCTCTTAAGCGTGATTCTGGTCTTACTGTTATGGCTTGGCATCACAGCAAGACCTTCCATGGCGGCCCCAAAAGATGTAACAGTAGGAGTCATTCTTGATCTGGATTCAACACTTGGTAAAATGGTGAACAACAGCCTCCAACTTGCCGTCGAAAATTACTATTCCGCTCATACCGATACAGCCACCAAGATCCACCTTATAGTCCGGAATGTTTCTCAGGACGACGTCGTCAACGCGGCAGAAGAAGCTTATGGTCTAATAAAGAAAGAAAAAGTGCGTGCCATATTGGGGCCCCAGAATTCAGAGCAAGCAAGGTTTCCAGTGAGACTGGGTGAGCAATTCCAAGTACCCGTAATTTGGTTTCCCATAACTGGTCCTTCTCTTTTGCCACCTCCATCCCCGTCCTCCATTTACTCTGATCAAGGCCTTAGTTGCTTTCAGTTCCGAGCTATCGCTGACGTTATTAAAGCTCTTGGGTGGCAATCGATCGTGCCCATTTATGAAGAGACTGAATATGGCAGTCACCTTATTCCATGCCTCTCCAATGTCTTAAAAGAAATGGGCATTCGAATGGCTAACGTAACTGCCATGGATTCAGATTCTTCAGAATTTGCAATTAACAGCACTCTTGACAAGTTAAACAACACGCGAGCACGTGTGTTTCTTGTCCATATGAGCATGAATCTCGGAGAAAATTTCATTTTGGCTGCACAAAGAAAAGAGATGATGGGTGAAGGATATGCATGGATACTTACCCAAGAGCTATCTTCTTTGACAGATCCTCTACTTGTGATTAATAGAAGGTTGTATTATAGGGATGGAGAAATTAGTTTTTTCAATGATTATGTTTCTTTGCAAACATACATGCAAGGTGCAATAGGAGTGCGGCCAGTGCATTTGAGCAAAAGAGGTGATGAGCGTAGGAAGATAGAGGAGCATTTCCTTGATAAGTTCAAAAGTCGACTAACTATCTATGGATGGTGGGCTTATCATACAATCGAAGCATTGGCTATGGCTTTAGAGAAGGTAGGAACGGACAATGGCACAAAACTTCGCGATGAAATTCTGGCTACTAGTTTCACAGGCGTGTCAGGAGTAAATTTTAGTTTAAGGGGAGGACAAATAGATCAATCGGTGCTTGAAGTATACAATGTGATAGGAGACAGAGAAAGGATCATAGGATCTTGGAATCCTAAAACTGGACTTGACCAAAAGCATGATAAAGGTAATGGTGATAAGATATCTAGTGAATACCACCTACAGGATCCAATATGGCCGGGAGACACATTTGATAAACCACCAAAATTGAGAATTGGGGTCCCAAGAACAAACTCTTTTCCTGAATTTGTGGGTGTGGATTATAATGACTCTAGTAAGCCGCTGGTTGAAGGCTTTGCCATTAATGTATTCTCAAAAGCTACCAATATATTGCCGTTTTCGTTACATAATTATGAGTTTGTTCCCTTGCCGAAAAATGGAAGCGATGCTCCCATGACCTATGATGATATTCTCTGCAGCCAAATGAAAGAGGAGGCAAGTTTTCATTCTTGTTTTTTTAACTTGTTTTACTTGTATCAATTCATCTTTTAG	1635	0.4177	MGPIMAELQKSSKASLLSVILVLLLWLGITARPSMAAPKDVTVGVILDLDSTLGKMVNNSLQLAVENYYSAHTDTATKIHLIVRNVSQDDVVNAAEEAYGLIKKEKVRAILGPQNSEQARFPVRLGEQFQVPVIWFPITGPSLLPPPSPSSIYSDQGLSCFQFRAIADVIKALGWQSIVPIYEETEYGSHLIPCLSNVLKEMGIRMANVTAMDSDSSEFAINSTLDKLNNTRARVFLVHMSMNLGENFILAAQRKEMMGEGYAWILTQELSSLTDPLLVINRRLYYRDGEISFFNDYVSLQTYMQGAIGVRPVHLSKRGDERRKIEEHFLDKFKSRLTIYGWWAYHTIEALAMALEKVGTDNGTKLRDEILATSFTGVSGVNFSLRGGQIDQSVLEVYNVIGDRERIIGSWNPKTGLDQKHDKGNGDKISSEYHLQDPIWPGDTFDKPPKLRIGVPRTNSFPEFVGVDYNDSSKPLVEGFAINVFSKATNILPFSLHNYEFVPLPKNGSDAPMTYDDILCSQMKEEASFHSCFFNLFYLYQFIF	544

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele43g1178	544	Pfam	Receptor family ligand binding region	57	401	IPR001828	-
	Lele43g1178	544	Gene3D	-	166	366	-	-
	Lele43g1178	544	PANTHER	OS06G0188250 PROTEIN	302	396	-	-
	Lele43g1178	544	SUPERFAMILY	Periplasmic binding protein-like I	36	412	IPR028082	-
	Lele43g1178	544	Gene3D	-	36	165	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele43g1178	Lele-ChrLele43	20122093	20125088	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele43g1178	15	511	Ion Channels	AT5G27100	29.981	1.81e-66	229