Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele43g1171 ATGGGTGGTGGCTGTAGGAACAAGACATCATCGCGTAAGAGAAGAAGAAGCGGGAGTGACTATGTGATAGACACTCTTGAGAAGTGGAAGAAATACAACAGTGAGCTTGAGTTTGTCAAAAATGGTGGAGCAAACAAAGGGACGAGTCACAGAGTTCCAGCAAAAGGCTCAAGAAAGGGGTGCATGCGAGGCAAAGGAGGGCCTCAAAACTCAGATTGCAACTACAGAGGAGTGAGACAGAGGATTTGGGGCAAATGGGTGGCAGAAATTCGTGAACCCATCACTGGAAGTCACAGTAATTTGGGAAATAAGAAACCGAATCGCTTATGGCTTGGCACTTTCTCTACTGCACTTGAAGCTGCTCTTGCTTATGATGAAGCAGCCAGAGCCATGTACGGTCCTTGTGCTCGTCTGAACTTTCCTGACTATAATATGGAAGGAGACGAAGAAGAAGCCACATGCTCTAATGAGGAAACAGAGGACAAACATGACGTTGTTCTGGTGAAGACGGAGGAAGAAACAGATGAGTCTAGTGTCATTGGAAGTGAAGCTTCCTTTGGGAAGAATCAGATGGGGGAAATGGCTTCTCAGATTCTGGGATTTTGTACATCTGATCACTCTCAAAATGAGGAGGAACATAAAGCTTCTATAGAGAGGAAATTTGAAGATGAGGAGGGTGTGAACAATTCTGGTTCTAGTAAAGGAAACTCCATGTTTGATGAAAAAGAAGGGGATGAGTGGCAGAGTGGTCATTTGCCTGTGTATCTGAATAACATGAAGGAGGCAGACTTGGAAGTGGGCTATTATGACTACAATTTCTTGAGACCTGATTATGACTTCGGCTTATGGGAAGAGAAAAACTTACTTGGTATATGGTTTCCACACATGTCTTCTTAA 897 0.4404 MGGGCRNKTSSRKRRRSGSDYVIDTLEKWKKYNSELEFVKNGGANKGTSHRVPAKGSRKGCMRGKGGPQNSDCNYRGVRQRIWGKWVAEIREPITGSHSNLGNKKPNRLWLGTFSTALEAALAYDEAARAMYGPCARLNFPDYNMEGDEEEATCSNEETEDKHDVVLVKTEEETDESSVIGSEASFGKNQMGEMASQILGFCTSDHSQNEEEHKASIERKFEDEEGVNNSGSSKGNSMFDEKEGDEWQSGHLPVYLNNMKEADLEVGYYDYNFLRPDYDFGLWEEKNLLGIWFPHMSS 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele43g1171 298 Gene3D AP2/ERF domain 74 142 IPR036955 GO:0003700|GO:0006355
Lele43g1171 298 MobiDBLite consensus disorder prediction 207 227 - -
Lele43g1171 298 MobiDBLite consensus disorder prediction 207 244 - -
Lele43g1171 298 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 9 242 - -
Lele43g1171 298 SUPERFAMILY DNA-binding domain 74 142 IPR016177 GO:0003677
Lele43g1171 298 MobiDBLite consensus disorder prediction 42 69 - -
Lele43g1171 298 MobiDBLite consensus disorder prediction 1 20 - -
Lele43g1171 298 CDD AP2 73 142 IPR001471 GO:0003700|GO:0006355
Lele43g1171 298 FunFam Ethylene-responsive transcription factor 2 73 142 - -
Lele43g1171 298 SMART rav1_2 74 147 IPR001471 GO:0003700|GO:0006355
Lele43g1171 298 ProSiteProfiles AP2/ERF domain profile. 74 141 IPR001471 GO:0003700|GO:0006355
Lele43g1171 298 Pfam AP2 domain 73 133 IPR001471 GO:0003700|GO:0006355
Lele43g1171 298 PRINTS Ethylene responsive element binding protein signature 75 86 IPR001471 GO:0003700|GO:0006355
Lele43g1171 298 PRINTS Ethylene responsive element binding protein signature 107 123 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele43g1171 Lele-ChrLele43 20054881 20055777 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele43g1171 12 210 AP2-EREBP Transcription Factor Family AT2G40340 41.441 6.75e-44 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lele43g1171 AP2 1.9e-13 CL0081