Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele43g1165 ATGGAAGGCCCTGTAACAGAAGGCGAAGGTATGCTTCCTCCATTGAATCTCTTCATGGCAGAAGAAGAAGACAAGAAATCTGAGTTTCACTCCAATAAAAAAGACCATGAGGAGAGAGAAGAAGAAGAAGGTAAAGGCGGCGGCGGCGGCCTTATTAGGAGCTGGATGTCCACCACCGTCACTCCTCTGGGAACGAGAACAGGGGAACCTGAAACAGAGGACAACACCAGAAACGAGATTCCCAAGAAGGAAGTTGAAGAAGGTGGCGATGTCGAACGGGGAGGAGAAGGAGGGATCTTGAATAATATAATTTCCAATCTGTTTCATCAAAGTGATGACGAACAAGATCAGAAAATGGAAGGTGATGAAGAGAAGAACAAGCAAGTGAAAACAGAGGAGGAAGACAGTAATGGCGGCGGTGTAATTGAAAACATAGTCTCCCACTTGCCTCATTCAATCCCAGGTACAAATATACTTCTTTCTTGTCTTCTTCTCAATTATGTGCTTAATGCCATGCCCTGGTTCCTGGTTGTGCTGGCACCCAAGCCATCATCTGGACCTCACAAGTCAAGGGAGTGCCTGCCTCTTAACCTTATCCTGCGTAATAGGTTGAAGTATGCTCTCACCTATACAGAAGTTATTGCCATCTTGATGCAGCGCCATGCTCTGGTTGATGGGAAAGTTAGGACAGATAAGACATATCCTGCTGGTTTCATGGATGTTGTGTCCATCCCCAAGACCAATGAAAATTTCCGTCTACTTTATGACACAAATGGTCATTTCCGTCTCCAAGCTATTAGGGACGAAGGAGCAAAGTTCAAGCTTTGCAAGGTTAGATTCGTGGCTTTTGGCCAGAAGGGCATTCCCTATCTTAACACGTATTATGGGCGCTCCATCCGCTATCCTGATCCATTGATCAGGGCAAATGACACCATCAAACAGGACTTGGAAACTAACAAGATCACTGACTTCATCAAGTTTGATGTTGGTAAAGTGGATAAGGTGACCGGAGGAAGGAACAGAGGTCGTGTTGGTGTTATCAAGAACAAGGCGAAGCATAAGGGAAGTTTTGAGACCATCCATGTCCAGGATGCGACTGGTCATGAATTTGCTACTCGTATGGGAAACGTCTTCACAATAGGCAAAGGCACAAAACCATGGGTTTCTCTTCACAGGGGCCGTGGTATCAAGTTATCTATCATTGAGGAGGCTAGAAAGAGGCTGGCTACTAAACATGAGGCCACAGCATAA 1251 0.4564 MEGPVTEGEGMLPPLNLFMAEEEDKKSEFHSNKKDHEEREEEEGKGGGGGLIRSWMSTTVTPLGTRTGEPETEDNTRNEIPKKEVEEGGDVERGGEGGILNNIISNLFHQSDDEQDQKMEGDEEKNKQVKTEEEDSNGGGVIENIVSHLPHSIPGTNILLSCLLLNYVLNAMPWFLVVLAPKPSSGPHKSRECLPLNLILRNRLKYALTYTEVIAILMQRHALVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTNGHFRLQAIRDEGAKFKLCKVRFVAFGQKGIPYLNTYYGRSIRYPDPLIRANDTIKQDLETNKITDFIKFDVGKVDKVTGGRNRGRVGVIKNKAKHKGSFETIHVQDATGHEFATRMGNVFTIGKGTKPWVSLHRGRGIKLSIIEEARKRLATKHEATA 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele43g1165 416 MobiDBLite consensus disorder prediction 19 47 - -
Lele43g1165 416 MobiDBLite consensus disorder prediction 113 137 - -
Lele43g1165 416 MobiDBLite consensus disorder prediction 54 69 - -
Lele43g1165 416 MobiDBLite consensus disorder prediction 1 97 - -
Lele43g1165 416 PANTHER 30S/40S RIBOSOMAL PROTEIN S4 177 406 IPR000876 GO:0003735|GO:0005840|GO:0006412
Lele43g1165 416 MobiDBLite consensus disorder prediction 113 139 - -
Lele43g1165 416 Coils Coil 19 39 - -
Lele43g1165 416 FunFam 40S ribosomal protein S4 327 397 - -
Lele43g1165 416 Pfam Ribosomal family S4e 247 321 IPR013845 -
Lele43g1165 416 CDD S4 203 263 - -
Lele43g1165 416 Gene3D - 274 324 IPR038237 -
Lele43g1165 416 Gene3D - 327 397 IPR014722 -
Lele43g1165 416 CDD KOW_RPS4 327 381 IPR041982 -
Lele43g1165 416 Pfam 40S ribosomal protein S4 C-terminus 364 410 IPR032277 -
Lele43g1165 416 MobiDBLite consensus disorder prediction 70 93 - -
Lele43g1165 416 Gene3D - 175 269 IPR036986 GO:0003723
Lele43g1165 416 FunFam 40S ribosomal protein S4 274 324 - -
Lele43g1165 416 FunFam 40S ribosomal protein S4 167 269 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele43g1165 Lele-ChrLele43 20017539 20021371 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele43g1165 179 414 Cytoplasmic Ribosomal Protein Gene Family AT5G07090 82.627 2.26e-144 409