Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele43g1158 ATGGGGAATTGTTGTAGTAACAATCTTCCTCGTCAATATTCAATGGAACAAGAGGTGAATGAGACAGAATTTGAGCGCGGAGACGATCAAAGTTCCATTTCCACATATGGTGAAGGTGAAGGGCGAGTCAGGCTAAGAGGACACTCTAGGTTTGTGTCCATGTACACCCAGCAGGGAAGAAAAGGAGTCAATCAAGATGCAATGACAGTTTGGGAGGACTTCAAGGGAGAAAAAGATATGATATTTTGTGGTGTGTTCGATGGTCACGGTCCTTTTGGGCACGTGGTTGCTCGATTTGTACGCAAACATCTACCCTCAAAGCTTTCTGCAGCAATCAAAATGTCACAGCAAATGACCTGCATGTATAATAATGGTACTGCAGCAGGTGAAAATCACCAAGCACGGTCCCTTGCTTCATGGGAGAAAACCTTCTTGAAATCCTTCAACGACATGGATCAAGCCATTGCCCGGGACATAAACACCGACAGTTTTTACAGTGGTAGCACTGCTGTAACTGTCATCAAACAGGGTGACCAGCTGATAATTGGCAATTTGGGTGACTCTCGTGCGGTTCTTTGCACAAGAGGAGCTAGAGATCAACTCATTCCTGTTCAACTTACTGTTGACTTGAAACCAGATATTCCAAGTGAAACTGAAAGAATCCGTAGCTGTGAAGGCAGAGTTTTCGCTGAAGAAGAAGAGCCTGATGTGTACAGAATGTGGATGCCTGATGAAGACTGCCCTGGACTAGCTATGTCAAGAGCCTTTGGGGACTTTTGCTTAAAAGATTATGGTCTCATCTCAGCTCCCGATGTCTTCTATCGAAGATTAACCAAGCAAGATGAATTTGTTGTTCTGGCCACTGATGGGGTTTGGGATGCACTGACAAATGATGAAGTTATAGAAATAGTTTCTTCAGCACCAGGGAGGTCCAGAGCAGCAAGATTGTTAGTAAAGAGAGCTGTGCAGGCATGGAGGTATAAATTTCCTGGCGCCAAAGTTGATGATTGTGCAGCCATATGTCTGTTTCTGAAAGACCAACCAGAATCTGGGGAAAAGAGGCGACAAAGGAAGAAGAATTACTATGAATCTGCTAGAAATGAAGAAGACACCACAAGCTTAGATAGTTCAATGTCAAAGGATGAATGGGTAGCTCTTAAAGGGTTATCCAGAGCCAACTCTATATCCAAACTTACTGGTCTCATCAGGGAAGTGAGCAGAAGGCATCCATCTGAGTTTCGTGAGGGTCCTCAAGTTCACTAG 1263 0.4426 MGNCCSNNLPRQYSMEQEVNETEFERGDDQSSISTYGEGEGRVRLRGHSRFVSMYTQQGRKGVNQDAMTVWEDFKGEKDMIFCGVFDGHGPFGHVVARFVRKHLPSKLSAAIKMSQQMTCMYNNGTAAGENHQARSLASWEKTFLKSFNDMDQAIARDINTDSFYSGSTAVTVIKQGDQLIIGNLGDSRAVLCTRGARDQLIPVQLTVDLKPDIPSETERIRSCEGRVFAEEEEPDVYRMWMPDEDCPGLAMSRAFGDFCLKDYGLISAPDVFYRRLTKQDEFVVLATDGVWDALTNDEVIEIVSSAPGRSRAARLLVKRAVQAWRYKFPGAKVDDCAAICLFLKDQPESGEKRRQRKKNYYESARNEEDTTSLDSSMSKDEWVALKGLSRANSISKLTGLIREVSRRHPSEFREGPQVH 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele43g1158 420 CDD PP2Cc 50 344 IPR001932 -
Lele43g1158 420 Pfam Protein phosphatase 2C 65 321 IPR001932 -
Lele43g1158 420 PANTHER PROTEIN PHOSPHATASE 40 342 - -
Lele43g1158 420 MobiDBLite consensus disorder prediction 353 376 - -
Lele43g1158 420 SMART PP2C_4 42 342 IPR001932 -
Lele43g1158 420 MobiDBLite consensus disorder prediction 353 378 - -
Lele43g1158 420 ProSiteProfiles PPM-type phosphatase domain profile. 51 344 IPR001932 -
Lele43g1158 420 SUPERFAMILY PP2C-like 48 347 IPR036457 -
Lele43g1158 420 Gene3D - 45 347 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele43g1158 Lele-ChrLele43 19957785 19960300 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele43g1158 1 348 PP2C-type Phosphatase Gene Family AT5G01700 52.676 1.82e-125 366
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele43g1158 43 19957785 19960300 Lele43g1158 43 19957785 19960300 ECH
Lele41g0203 41 1635344 1637833 Lele43g1158 43 19957785 19960300 hybridization
Lele42g0198 42 1630635 1632984 Lele43g1158 43 19957785 19960300 hybridization