Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele43g1125 ATGGCGATTCCTCCTCAAATCTTCCCTCCTCGTAAACGACGGCCGTCGGCGGGGTTGTTTATCTCTCCCAAACTAACAGAACTCGACCTCCTTCACTCTCTTCTTCACCTAACCCATGATATTTCCTCTCTCAAACCCATCCACTTTCTTCTCAGACGCAATTCATCCTCCATCATTCGTAAAATCAATCTCCTCGCTGTTCTATTCGAAGAGTTGATTAGAACTTCGGTTCCTCTTTCCTCTCAATCTGTTCTTCTGTGTTTCGAAGAAATGTACACAGTTCTACAGAGAATCAAGACCTTGATTGAAGATTGCTCCAACGGAAGCAAGATGGCGCTGTTGATGCAGAACGAATCGATTGCTGATAATTTTCACAAATTCACTGCAGATTTATCAACTCTTCTAGATATTTTCCCGGTGACGGAGCTTGAATTAAGCGACGACGTGCAAGAGCTTGTGATCCTGATCAGGAAACAATGTACTGATTCCAAGGCTTTTGTGGATCCGAAGGACAACGAGCTCAGGCATGAGGTTGTCACGATGCTTGATCGTATTAAGCGGGAGATCGTCCCCGAACATTCGAAGCTTGCAGAAATTTTCGAGAGGATGGAAATCCGGGATTCTTCGAGTTGCAGAGCGGAGATTGAGAGTTTAGAGGAGGAGATTCATAATCGAAACGATGAGCAATCCAAATCCGAGCTCGGCGCTTTGATCGGACTCGTCCGATACGCGAAATGCGTTCTTTTCGGAACTTCCACGCCGTCAACGTCTTCCTCTGATGATGTACAGCGGCGGAAACAGCCATCGGAGATCGTTGTCCCGGCGGATTTCAGGTGCCCGATCACTCTAGAACTTATGCAAGATCCGGTTGTCGTGGCAACAGGACAGACGTACGATCGCGAGTCCATCCAACTGTGGTTCGAATCGGGGCATAACACGTGTCCCAAGACTGGTCAAACTGTGGCCCACATGGACCTCATCCCGAACCGTGCATTGAAGAATCTTATAGTGATGTGGTGCCGCGAGCAAAAGATACTGTTTGAAACCGTGGGAAGTAACGAGAAACCTCACGGCGTTATCATCAACAAAGCCGCCTTGGAAGCTACTAGAATGACGGCGTCATTCTTAGTCAATAAATTGTCTCTTTCTCCGTCCATGGAAGCCGCAAACGCCGTCGTTTATGAGCTTCGTGTTCTGTCTAAAACGGACTCCGATAGCCGAGCCTGCATAGCCGAAGCCGGAGCCATCCCTCATTTAGTTAGCTACTTGAGCTTCAACGTCGGCTCACAGAATCCAAACCTACAAGTTAACGCCGTCACGACCATCCTAAACCTTTCCATCCTCGATGCGAACAAAACGAGGATAATGGAGACTGACGGAGCGTTAAACGGCGTCATCGAGGTCCTTCGCTCGGGAACCACGTGGGAGGCGAAGGCCAACGCAGCCGCCACAATATTCAGCTTATCTGGCGTTCACCCGTATAGAAAAAGACTAGGGAGGAAGACACGTGTCACGCGGGGGTTGATTGACTTGGCAAGGTGTGGGCCCACAGGTGCCAAGAGGGATGCTCTGGTGGCAATTTTGACCCTGGCAGCGGATAGAGAGACGGTGGCGAGGTTGGTGGAAGCTGGGGTTGTGGAGATGACGGCGGAAGTGATGGACGGGTTACCAGAAGAGGCGGTAACGATTCTTGAGGTGGTTGTGAAGCGGGGTGGGTTGGGGGCTGTCGCAGCCGCGTTCGGCAGCATTAAAAAATTGGGAGTTATATTGAGGGAAGGTTCTGATAGGGCCAGAGAGAGTGCGGCGGCAACGCTGGCCACAATGTGTCGTAAAGGGGGATCGGATATAGTGGCGGAGTTGGCCTCCTTGCCGGGAATTGAAAGAGTGATATGGGAATTGATGGCCATTGGGACTGTAAGAGGGAAAAGAAAAGCCGCCACGTTGTTGAGGACTCTCCGGCGATGGGCGGCCGGTTTGGACGGTGCAGGGCCAACGGAAGGATTTTCAACGGCCATCGCTTCGTCAACAACGGTGGTTTCAACTCAATAG 2049 0.5071 MAIPPQIFPPRKRRPSAGLFISPKLTELDLLHSLLHLTHDISSLKPIHFLLRRNSSSIIRKINLLAVLFEELIRTSVPLSSQSVLLCFEEMYTVLQRIKTLIEDCSNGSKMALLMQNESIADNFHKFTADLSTLLDIFPVTELELSDDVQELVILIRKQCTDSKAFVDPKDNELRHEVVTMLDRIKREIVPEHSKLAEIFERMEIRDSSSCRAEIESLEEEIHNRNDEQSKSELGALIGLVRYAKCVLFGTSTPSTSSSDDVQRRKQPSEIVVPADFRCPITLELMQDPVVVATGQTYDRESIQLWFESGHNTCPKTGQTVAHMDLIPNRALKNLIVMWCREQKILFETVGSNEKPHGVIINKAALEATRMTASFLVNKLSLSPSMEAANAVVYELRVLSKTDSDSRACIAEAGAIPHLVSYLSFNVGSQNPNLQVNAVTTILNLSILDANKTRIMETDGALNGVIEVLRSGTTWEAKANAAATIFSLSGVHPYRKRLGRKTRVTRGLIDLARCGPTGAKRDALVAILTLAADRETVARLVEAGVVEMTAEVMDGLPEEAVTILEVVVKRGGLGAVAAAFGSIKKLGVILREGSDRARESAAATLATMCRKGGSDIVAELASLPGIERVIWELMAIGTVRGKRKAATLLRTLRRWAAGLDGAGPTEGFSTAIASSTTVVSTQ 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele43g1125 682 FunFam RING-type E3 ubiquitin transferase 359 547 - -
Lele43g1125 682 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 414 460 IPR000225 GO:0005515
Lele43g1125 682 PANTHER U BOX DOMAIN-CONTAINING 52 652 - -
Lele43g1125 682 SUPERFAMILY ARM repeat 376 652 IPR016024 -
Lele43g1125 682 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 273 348 IPR013083 -
Lele43g1125 682 SUPERFAMILY RING/U-box 272 346 - -
Lele43g1125 682 SMART Ubox_2 276 339 IPR003613 GO:0004842|GO:0016567
Lele43g1125 682 FunFam RING-type E3 ubiquitin transferase 269 346 - -
Lele43g1125 682 Pfam U-box domain 273 344 IPR003613 GO:0004842|GO:0016567
Lele43g1125 682 Pfam Armadillo/beta-catenin-like repeat 404 446 IPR000225 GO:0005515
Lele43g1125 682 Gene3D - 51 143 IPR036537 GO:0007166
Lele43g1125 682 ProSiteProfiles U-box domain profile. 272 346 IPR003613 GO:0004842|GO:0016567
Lele43g1125 682 SMART arm_5 403 447 IPR000225 GO:0005515
Lele43g1125 682 CDD RING-Ubox_PUB 277 319 IPR045210 -
Lele43g1125 682 Gene3D - 353 658 IPR011989 -
Lele43g1125 682 Coils Coil 208 228 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele43g1125 Lele-ChrLele43 19626685 19628733 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele43g1125 9 658 U-box Gene Family AT5G01830 59.786 0.0 756