Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele43g1116 ATGCATCGCCGACTTCTCGACGCCGGGCTAAGTGTGTCTCCGGCATATGGGAATAAGACCCGGGATTCGTTCGTGGGCGATGTGAACTTCGACGCGAACATGGTGATCATATTGGCGGCTTTGTTGTGCGCATTGATATGCGCGCTTGGATTGAACTCGATAGTGCGATGTGTTTTGCGGTGCAGCCGAAGATTTTCCTCAGATATCACAGAACAAACAGCTGCTAGGCTTTCTTCAAAGGGCCTGAAGAAACGTCACCTGAACCAGATTCCGGTGAAAGAGTACGGGCCCGGTGCGAATATTCCGGCGACGGAGTGCCCGATATGCCTTGGGGAGTTCGAGAAAGGAGATAAGGTGCGAATGCTGCCAAAATGCAATCACGGGTTCCATGTGAGGTGCATCGACACATGGCTTTTGTCACATTCTTCTTGCCCCAACTGTCGCCATTCGCTGCTAGAGAAATCCACAAATCCAAATCCAAATTCAAATTCGAATAGGAGGATTGAAGGAGGAGCAGCCGCGGATTCTCAGGCGCCGGCAGATGGGTCCGGCAACACGCAAGTTCACGCTGTGGTGGTTGACGAGCGAGCAAGTTGA 597 0.5226 MHRRLLDAGLSVSPAYGNKTRDSFVGDVNFDANMVIILAALLCALICALGLNSIVRCVLRCSRRFSSDITEQTAARLSSKGLKKRHLNQIPVKEYGPGANIPATECPICLGEFEKGDKVRMLPKCNHGFHVRCIDTWLLSHSSCPNCRHSLLEKSTNPNPNSNSNRRIEGGAAADSQAPADGSGNTQVHAVVVDERAS 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele43g1116 198 ProSiteProfiles Zinc finger RING-type profile. 106 148 IPR001841 -
Lele43g1116 198 SUPERFAMILY RING/U-box 87 162 - -
Lele43g1116 198 SMART ring_2 106 147 IPR001841 -
Lele43g1116 198 MobiDBLite consensus disorder prediction 152 170 - -
Lele43g1116 198 CDD RING-H2_EL5_like 105 148 - -
Lele43g1116 198 Pfam Ring finger domain 105 148 IPR001841 -
Lele43g1116 198 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 66 153 IPR013083 -
Lele43g1116 198 MobiDBLite consensus disorder prediction 152 188 - -
Lele43g1116 198 PANTHER RING-H2 FINGER PROTEIN ATL78 25 161 IPR044602 GO:0016567|GO:0016740
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele43g1116 Lele-ChrLele43 19539486 19540082 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele43g1116 4 166 C3H Transcription Factor Family AT3G10910 58.140 7.78e-59 181
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele43g1116 43 19539486 19540082 Lele43g1116 43 19539486 19540082 ECH
Lele41g0251 41 2066757 2067359 Lele43g1116 43 19539486 19540082 hybridization
Lele42g0243 42 2106527 2107117 Lele43g1116 43 19539486 19540082 hybridization