Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele43g1097 ATGGTTTCCTCTCAGTTTTCTGATTTGCCTAAGACTGGCAATTGCAAACCATTCCAAACCCAAATACTCTTTCCTGCAAGCCTCACTGACAGTGTAATTACGGACCAAGTTGAGCTTGATTTCTCTGATGTCTTTGGTCCAGTTACAGTGCCTTCTTTAGAAGTGAATGACGCTGATTCTGCTATTGTTGAGTACGTGGAAGAATCAAGTGAACTCGTTTATGATGATCCAGCTGTCATTTATACCCGCTCACATTCATTGGTTGGCCCTTCTTCTTGTGTTAGCCAATCACTTAAGCTTGGCAAACTGACTTTAAATGAAAGTGATGATTCATTGGAAGCAATGGAACATGTTGCTGGAGAGACCATTGAAGAAGTTGATGAATCTAATGGAAACAATGCCATCATTGAGGAGTCTCTTGAAGGTGATAACGGGCATCTCAAGAAGATCCAGAAAGTGAGCATTGAAGATTTCGAGATTTTGAAGGTTGTGGGACAGGGAGCATTTGCAAAAGTATATCAAGTGAGGAAAAAGGGTACTTCTGAAATATATGCAATGAAGGTAATGAGAAAGGACAGAATTATGGAAAAGAACCATGCTGAATACATGAAAGCTGAGAGGGATATTTTAACCCAAATAGAGCACCCCTTTGTTGTTCAACTCAGATACTCTTTTCAGACAAAATACAGATTGTATCTTGTGCTGGATTTTGTAAATGGGGGTCATCTTTTCTTTCAGCTTTATCATCAAGGCCTTTTCAGAGAGGATCTAGCACGCATATATGCTGCTGAGATTGTTTCTGCAGTTTCCCATCTCCATGCAAATGGAATAATGCACAGGGATCTAAAACCTGAAAATATCCTGCTGGATGCTGATGGCCATGTTATGCTGACGGATTTTGGCCTGGCCAAGCAATTTGAAAGTGATACAAGATGTAATTCCATGTGCGGAACAATAGAATACATGGCACCTGAAATTATTCTTGGCAAGGGCCATGATAAGGCTGCTGATTGGTGGAGTGTAGGAATCCTACTGTATGAGATGCTTACTGGAAAGCCTCCCTTCTGTGGTGGAAACCGTGACAAGATTCAGCAGAAAATAGTTAAAGACAAGATCAAGCTGCCAGCATTTTTATCTAGTGAAGCACATTCACTTTTGAAAATGCTACTGCAGAAGGATGCGACTAAGCGATTAGGCAGTGGAACAAAGGGTAACTTGGAAATTAAAGATCACAAGTGGTTTAAACCAATCAATTGGAGGAAGTTGGATGCACGTGAGGTTCAACCAAGCTTTCGCCCTGAAGTCGCTGGAAAGCATTGTGTTGCCAACTTTGAGAAGCGCTGGACTGATATGCCCATCGTGGATTCACCCGCTGCTAGTCCAAATGGCGTCAATCCTTTCAAAGACTTCAGTTATGTGAGATCTGCAGCTTCTTTCCTTCAAAGGAATAGCCCTGCTTTCTAG 1464 0.4173 MVSSQFSDLPKTGNCKPFQTQILFPASLTDSVITDQVELDFSDVFGPVTVPSLEVNDADSAIVEYVEESSELVYDDPAVIYTRSHSLVGPSSCVSQSLKLGKLTLNESDDSLEAMEHVAGETIEEVDESNGNNAIIEESLEGDNGHLKKIQKVSIEDFEILKVVGQGAFAKVYQVRKKGTSEIYAMKVMRKDRIMEKNHAEYMKAERDILTQIEHPFVVQLRYSFQTKYRLYLVLDFVNGGHLFFQLYHQGLFREDLARIYAAEIVSAVSHLHANGIMHRDLKPENILLDADGHVMLTDFGLAKQFESDTRCNSMCGTIEYMAPEIILGKGHDKAADWWSVGILLYEMLTGKPPFCGGNRDKIQQKIVKDKIKLPAFLSSEAHSLLKMLLQKDATKRLGSGTKGNLEIKDHKWFKPINWRKLDAREVQPSFRPEVAGKHCVANFEKRWTDMPIVDSPAASPNGVNPFKDFSYVRSAASFLQRNSPAF 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele43g1097 487 ProSiteProfiles AGC-kinase C-terminal domain profile. 415 482 IPR000961 GO:0004674|GO:0005524|GO:0006468
Lele43g1097 487 Gene3D Phosphorylase Kinase; domain 1 155 455 - -
Lele43g1097 487 SUPERFAMILY Protein kinase-like (PK-like) 155 476 IPR011009 -
Lele43g1097 487 SMART serkin_6 158 414 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele43g1097 487 ProSiteProfiles Protein kinase domain profile. 158 414 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele43g1097 487 ProSitePatterns Protein kinases ATP-binding region signature. 164 187 IPR017441 GO:0005524
Lele43g1097 487 SMART pkinase_C_6 415 474 IPR000961 GO:0004674|GO:0005524|GO:0006468
Lele43g1097 487 Gene3D Transferase(Phosphotransferase) domain 1 238 433 - -
Lele43g1097 487 Pfam Protein kinase domain 158 414 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele43g1097 487 ProSitePatterns Serine/Threonine protein kinases active-site signature. 277 289 IPR008271 GO:0004672|GO:0006468
Lele43g1097 487 CDD STKc_AGC 164 414 IPR045270 GO:0004674|GO:0005524
Lele43g1097 487 FunFam Non-specific serine/threonine protein kinase 238 433 - -
Lele43g1097 487 FunFam Non-specific serine/threonine protein kinase 155 261 - -
Lele43g1097 487 PANTHER RIBOSOMAL PROTEIN S6 KINASE 127 476 - -
Lele43g1097 487 Pfam Protein kinase C terminal domain 436 472 IPR017892 GO:0004674|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele43g1097 Lele-ChrLele43 19396007 19398460 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele43g1097 1 484 AGC Kinase Gene Family AT3G08720 68.238 0.0 669
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC-Pl Lele43g1097 Pkinase 3.2e-75 CL0016