Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele43g1094 ATGGCAGACATACGAGTCAAAACAGCCACGACAGTGATATTTGAAAGTCATGATTCTCCAAACACCATAGATTTCTCAGAAGGAAGGTGTAGTACAGAGATGATTAAATTCATAAATCCAGAGGATTTCCGATGCCGGATTTCGCTTGAGCTAATGACGGACCTAGTAACTGTATCAACAGGTCAAACCTACAACCGAACTTCGATACAACAATGGCTGAACTCTGTAAACAAAACCTGCCCCAAAACAGGGGCGAAGCTGAAGAACACAGTTAATCCCGAACACAACACTCCGAAAGCTTATACAACAATTCTGCATCGACAATGGCGTTTCCCTGACCAAATTAAACAATCAAAGTCTCGAAAAAGGGCTTCGTCCATAAGCAGAACGCAGAGGCTTTTAGCAATTGGAATCAGCAATCACCTCGCAGAGAGAGAGCCCTTGGGAGGTGAAAGAGAAACCTGTGGGTTTCTGGAGCCTGGGAGGCTACAGTACTTTTCATTCCCTCGCTCCTCGAACCTGTTTCTTCAACCTACGCCTCTCAATTCGCTCCTTTTCAGGTTCTGA 567 0.4497 MADIRVKTATTVIFESHDSPNTIDFSEGRCSTEMIKFINPEDFRCRISLELMTDLVTVSTGQTYNRTSIQQWLNSVNKTCPKTGAKLKNTVNPEHNTPKAYTTILHRQWRFPDQIKQSKSRKRASSISRTQRLLAIGISNHLAEREPLGGERETCGFLEPGRLQYFSFPRSSNLFLQPTPLNSLLFRF 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele43g1094 188 SMART Ubox_2 42 101 IPR003613 GO:0004842|GO:0016567
Lele43g1094 188 ProSiteProfiles U-box domain profile. 38 112 IPR003613 GO:0004842|GO:0016567
Lele43g1094 188 Pfam U-box domain 40 91 IPR003613 GO:0004842|GO:0016567
Lele43g1094 188 CDD RING-Ubox_PUB 43 84 IPR045210 -
Lele43g1094 188 PANTHER U BOX DOMAIN-CONTAINING 39 91 - -
Lele43g1094 188 SUPERFAMILY RING/U-box 40 90 - -
Lele43g1094 188 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 38 95 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele43g1094 Lele-ChrLele43 19367914 19371356 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele43g1094 40 90 U-box Gene Family AT5G01830 62.745 5.60e-15 70.5