Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele43g1087 ATGTCTGGTTTGTATAATCCGAACTTCTCTCACGCTAGAGCGGCTTCTCCTCAGATTAGAAGCATCCCGGATGTGGATAGTCAGTACTTGTCGGAGTTGTTAGCAGAGCATCAGAAGCTTGGACCCTTCATTCAAGTCCTTCCAATATGCAGTCGACTGTTAAATCAAGAAATATTGAGAGTTTCTGGAATGATGTCCAACCGAAGTTTTGGTGATTTTGACAGACTGCGGAATAGAAGCCCGAGTCCTATGGCTTCTTCAAATCTCATGTCAAATGTCACTGGGACTGGATTAGGTGGCTGGAATTCCCAGGAGAGATTTTGTGGACCCGCTGGAATGACAATGGACTGGCAAGGTGGAGCCCCCGCAAGTCCTAGTTCTATCTCTGTGAAGAGGATCTTGCGATTGGAAATTCCAGTAGATACATACCCCAATTTCAACTTTGTTGGAAGGCTTCTGGGACCCAGAGGCAACTCTCTGAAACGGGTAGAAGTTAGTACAGGATGCCGTGTGTATATTAGAGGAAAAGGATCAATAAAGGATCCAGACAAGGAAGAGAAATTAAGAGGAAGACCAGGCTATGAACATCTCAATGAACCGCTGCATATCTTGATCGAGGCTGATTTACCTGCAAGTATTATTGACTTAAGGCTTAGACAGGCACAGGAAATTATAGAAGAATTGCTCAAACCTATGGATGAGTCACAGGACTTAATTAAGAGGCAGCAGTTGCGTGAACTGGCTATGCTGAATTCAAATTTCAGAGAAGAGAGTCCTGGACCAAGTGGTAGTGTATCTCCATTCAATTCAAGTGGAATGAAACGTGCGAAAACAGGTCGCTGA 843 0.4437 MSGLYNPNFSHARAASPQIRSIPDVDSQYLSELLAEHQKLGPFIQVLPICSRLLNQEILRVSGMMSNRSFGDFDRLRNRSPSPMASSNLMSNVTGTGLGGWNSQERFCGPAGMTMDWQGGAPASPSSISVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEVSTGCRVYIRGKGSIKDPDKEEKLRGRPGYEHLNEPLHILIEADLPASIIDLRLRQAQEIIEELLKPMDESQDLIKRQQLRELAMLNSNFREESPGPSGSVSPFNSSGMKRAKTGR 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele43g1087 280 Pfam Homodimerisation region of STAR domain protein 24 72 IPR032377 -
Lele43g1087 280 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 137 255 IPR036612 GO:0003723
Lele43g1087 280 MobiDBLite consensus disorder prediction 255 280 - -
Lele43g1087 280 SMART kh_6 130 230 IPR004087 GO:0003676
Lele43g1087 280 MobiDBLite consensus disorder prediction 253 280 - -
Lele43g1087 280 Gene3D K Homology domain, type 1 20 261 IPR036612 GO:0003723
Lele43g1087 280 CDD SF1_like-KH 135 255 - -
Lele43g1087 280 PANTHER RNA-BINDING PROTEIN RELATED 26 271 IPR045071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele43g1087 Lele-ChrLele43 19296658 19302052 Dispersed/Tandem
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele43g1087 43 19296658 19302052 Lele37g1412 37 22844865 22849540 CCT
Lele43g1087 43 19296658 19302052 Lele38g1289 38 23635398 23640125 CCT
Lele43g1087 43 19296658 19302052 Lele39g0012 39 96635 101248 CCT
Lele43g1087 43 19296658 19302052 Lele40g1236 40 22136749 22141407 CCT
Lele43g1087 43 19296658 19302052 Lele43g1087 43 19296658 19302052 ECH
Lele41g0283 41 2305747 2318162 Lele43g1087 43 19296658 19302052 hybridization
Lele42g0277 42 2352877 2364707 Lele43g1087 43 19296658 19302052 hybridization