Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele43g1083 ATGATTAGGGTTAGGGCAATCACGCGTATGGAAGCGTCCCCCTACCCTGTCACTCCTCCGGTGACTTCCAGTTCCAGTCGATACGGTATCCCATCTGCTTCCAATATTATTCAGGCGCCCTTGTCGTTGTTGTTGGAGCATTTAGGGATTCTTCGAAGCAGGTCTAATCAACAAGAGGCCGAGCCCTTAATAAACAATAATAGAGTATCTTCTGGGTTCCGTGATGCTCTACGGAATCGCCTTGATGAGTCCTCCGTCAATCCTAATGATGGGGAGGTTTCAATTAGTATTATTGGGGCTGGGGAACAACGGCTTGACAGGGAAGGCGAAGTGAGGGAAGTTCTGTCCCAGAATGAAGTATCCATACCGGCGCAACCCTTGGCTGGGATGCCCTCTGTGACGCTTCCTCCTGCTTCGGGTAATCAGGAACGTTCGAGGACTGAGCATGTTGCAGCAGAGGGCGTTTCCCAATCTGTGAATGCAAATTCTGATGCCGAGGCTGGTGATGGAGTTGGGGCTAACGCTAGGGATTCTTCATCCCAGAGGTATGATATTCAGCAGGCTGCTCGCTGGATTGAGCAGGTCCTGCCTTTTTCTTTACTGTTGCTGGTCGTCTTCATTCGGCAGCATTTGCAAGGTTTTTTCATTACAATTTGGGTTACCGCTGTCCTTTTCAAGTCAAATGACATTTTGCGGAAGCAGACAGCCCTGAAGGGAGAGAGGAAAGTCCCTGTATTGATTGCCATTTCTATTGCATTTACATTGCACGTGGTTGGTGTATATTGGTGGTGTCAGAATAACGATATGCTATACCCATTGGCTATGCTTCCTCCTAAAATCATACCTCCATTCTGGCATGTTATTTTCATCATCACAGTAAATGATGCTTTGGTCCGCCAAGCTGGAATGGTATTCAAGTGTATTTTGTTGATGTATTACAAGAATGGCAGAGGCCGAAATTATCGTAAGCAGGGCCAAATGCTGACTCTAGTTGAGTACCTACTCCTTCTTTACCGTGCCTTGTTGCCAACTCCAGTATGGTATCGGTTCTTCTTGAACAAAGAATATGGAAGTTTCTTTTCTTCATTGATGACAGGATTATATCTAACATTTAAGCTGACATCAGTCATCGAAAAGGTGCAATCGTTCTTTGCTTCAGTGAAGGCATTGTCACGTAAAGAAGTGCACTATGGGGCTCATGCAACATCAGAACAGGTGAATGACGTTGGTGATCTTTGTGCTATTTGCCAGGAAAAGATGCATACCCCAATCTTACTTTCTTGTAATCACATCTTCTGTGAAGAATGCGTATCAGAATGGTTTGAGAGGGAAAGGACGTGCCCCTTGTGCAGGGCTTTGGTGAAACCAGCTGAGCTTAAATCATTTGGGGATGGCTCTACTAGTTTGTTTTTCCAAATATTCTAA 1425 0.4547 MIRVRAITRMEASPYPVTPPVTSSSSRYGIPSASNIIQAPLSLLLEHLGILRSRSNQQEAEPLINNNRVSSGFRDALRNRLDESSVNPNDGEVSISIIGAGEQRLDREGEVREVLSQNEVSIPAQPLAGMPSVTLPPASGNQERSRTEHVAAEGVSQSVNANSDAEAGDGVGANARDSSSQRYDIQQAARWIEQVLPFSLLLLVVFIRQHLQGFFITIWVTAVLFKSNDILRKQTALKGERKVPVLIAISIAFTLHVVGVYWWCQNNDMLYPLAMLPPKIIPPFWHVIFIITVNDALVRQAGMVFKCILLMYYKNGRGRNYRKQGQMLTLVEYLLLLYRALLPTPVWYRFFLNKEYGSFFSSLMTGLYLTFKLTSVIEKVQSFFASVKALSRKEVHYGAHATSEQVNDVGDLCAICQEKMHTPILLSCNHIFCEECVSEWFERERTCPLCRALVKPAELKSFGDGSTSLFFQIF 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele43g1083 474 ProSitePatterns Zinc finger RING-type signature. 428 437 IPR017907 -
Lele43g1083 474 ProSiteProfiles Zinc finger RING-type profile. 413 451 IPR001841 -
Lele43g1083 474 MobiDBLite consensus disorder prediction 126 177 - -
Lele43g1083 474 Pfam Zinc finger, C3HC4 type (RING finger) 411 454 - -
Lele43g1083 474 CDD RING-HC_RNFT1_like 412 451 - -
Lele43g1083 474 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 23 474 IPR044235 GO:0061630|GO:1904294
Lele43g1083 474 SMART ring_2 413 450 IPR001841 -
Lele43g1083 474 MobiDBLite consensus disorder prediction 135 164 - -
Lele43g1083 474 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 387 461 IPR013083 -
Lele43g1083 474 SUPERFAMILY RING/U-box 405 456 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele43g1083 Lele-ChrLele43 19255782 19260257 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele43g1083 24 474 C3H Transcription Factor Family AT5G01960 67.108 0.0 600