Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele43g1071 ATGCCCGCACGTGATGTTCAAGAAAGGAAAGGTTCAGAGAAGGCGAAGAATGAAATTCTGGGCCTCGGGGATAGCAACATCCCGTGCTCCTCCATCACCCCCAAAACCACTAACTCCCATTGCTACTTCCTCACCAACTCCTTCCTTCCTTCCTTCTTCCTCTTCTTCTCCTTCACCTCTTCAATGGGCAATTGTGGCACCAGAGAGGAATCGGCTGTTGTCTCCAATGCTCAAGTTCAACAGCTGCATATGTCGTCCTTGACTTCTAAAAGTGCTGCCAACGAGAAGAAGCATAATCGGTCTGTGTCAGATCTGAGCGACATTTCTACCCCGCGTCACAACTTCGAGGATATCAGGAAGAATACACTACTCTATACTCATGTCATTGCTTTTACATTGTATGAGCTGGAGACTATTACTAAGAGTTTTCGCTCCGATTATATCCTCGGAGAAGGGGGGTTCGGCACTGTCTATAAAGGTTACATTGACGAGAATGTGAGAGTTGGGCTCAAATCCCTTCCTGTTGCTGTCAAGGTTCTAAACAAGGAGGGTCTTCAGGGACATCGCGAGTGGCTTACAGAAATCAATTTCCTGGGACAGCTTAGGCATCCTAATTTGGTTAAGTTGATCGGATACTGCTGTGAGGACGATCACAGGCTACTTGTATACGAGTTCATGTTTCGAGGAAGTTTAGAAAATCATCTATTCCGAAAGGCAAATGTTCCTTTATCATGGGCTACAAGAATGATGATTGCCCTTGGAGCTGCTAAGGGGCTTGCTTTCCTTCATAATGCTGAAAGGCCAGTAATCTATAGAGACTTCAAAACTTCTAATATATTATTGGATTCTGATTATACAGCCAAGCTTTCTGATTTTGGACTAGCAAAAGCTGGACCACAAGGTGATGAAACCCATGTGTCCACCAGGGTTATGGGTACCTATGGGTATGCTGCCCCTGAATATGTAATGACTGGTCACCTGACTGCAAGGAGTGATGTGTATAGCTTTGGAGTTGTTCTTTTGGAACTTTTAACCGGAAGGAAATCTGTTGACAAAACAAGACCGGGCAAGGAACAAAGCTTGGTGGATTGGGCTAGGCCTAAACTTAATGACAAGAGAAAGCTCCTGCAGATACTCGATCCTAGATTGGAAAACCAATACTCAGTGAGGGCAGCACAGAAAGCATGTAGCTTGGCTTACTACTGTTTGAGTCAAAATCCAAAAGCCAGGCCGTTAATGAGTGATGTAGTCGAGACATTGGAACCCTTACAAAGTTGTAGTGATGGTGCTGGTGAAGTCTCATCATTGGGATCAAGTAATGCAGGTGGTGGTCCCTTTGCCATGACTGGAATCTCCGACTACCAGATGCGCCAGAGGTTTTCAAACAATGTCGGTCCAGGTGCTAGTTATTGGTCTCCGAACCCAAACTGCTCACCAGGTGCCCCTCCCACATGCAGGGTCAGATGA 1467 0.4581 MPARDVQERKGSEKAKNEILGLGDSNIPCSSITPKTTNSHCYFLTNSFLPSFFLFFSFTSSMGNCGTREESAVVSNAQVQQLHMSSLTSKSAANEKKHNRSVSDLSDISTPRHNFEDIRKNTLLYTHVIAFTLYELETITKSFRSDYILGEGGFGTVYKGYIDENVRVGLKSLPVAVKVLNKEGLQGHREWLTEINFLGQLRHPNLVKLIGYCCEDDHRLLVYEFMFRGSLENHLFRKANVPLSWATRMMIALGAAKGLAFLHNAERPVIYRDFKTSNILLDSDYTAKLSDFGLAKAGPQGDETHVSTRVMGTYGYAAPEYVMTGHLTARSDVYSFGVVLLELLTGRKSVDKTRPGKEQSLVDWARPKLNDKRKLLQILDPRLENQYSVRAAQKACSLAYYCLSQNPKARPLMSDVVETLEPLQSCSDGAGEVSSLGSSNAGGGPFAMTGISDYQMRQRFSNNVGPGASYWSPNPNCSPGAPPTCRVR 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele43g1071 488 Pfam Protein tyrosine and serine/threonine kinase 148 420 IPR001245 GO:0004672|GO:0006468
Lele43g1071 488 ProSitePatterns Protein kinases ATP-binding region signature. 149 178 IPR017441 GO:0005524
Lele43g1071 488 FunFam Probable serine/threonine-protein kinase PBL8 226 439 - -
Lele43g1071 488 Gene3D Transferase(Phosphotransferase) domain 1 226 433 - -
Lele43g1071 488 SUPERFAMILY Protein kinase-like (PK-like) 119 421 IPR011009 -
Lele43g1071 488 MobiDBLite consensus disorder prediction 465 488 - -
Lele43g1071 488 Gene3D Phosphorylase Kinase; domain 1 76 225 - -
Lele43g1071 488 FunFam Serine/threonine-protein kinase BIK1 109 225 - -
Lele43g1071 488 CDD STKc_IRAK 149 423 - -
Lele43g1071 488 PANTHER OS01G0588500 PROTEIN-RELATED 96 424 - -
Lele43g1071 488 ProSiteProfiles Protein kinase domain profile. 143 424 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele43g1071 488 ProSitePatterns Serine/Threonine protein kinases active-site signature. 269 281 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele43g1071 Lele-ChrLele43 19175436 19180116 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele43g1071 131 430 Glycoside Hydrolase AT3G07070 53.795 1.17e-108 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Lele43g1071 PK_Tyr_Ser-Thr 6.6e-48 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele43g1071 43 19175436 19180116 Lele43g1071 43 19175436 19180116 ECH
Lele41g0009 41 75166 78667 Lele43g1071 43 19175436 19180116 hybridization
Lele42g0016 42 112024 116339 Lele43g1071 43 19175436 19180116 hybridization