Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele43g1002 ATGGTTCTGCCCTTGTTTTCCCACTTCTGTATTTCTTGTAGTAGCTGTATAAATGGTAATGGGTTTTGCAACATCTACAAGGGGTTCTTCTTTAAATGGATTCTGCATTTGCTGAGAAATTCTTTGAAGGAGTTGCAACGAATTTTGCTTCTTGCCGTTGTTGTCGTATTCTCTGAATTTCATGGAGATGCAGAGATGAGTTATTGGTCACCAGCATATGTTTTTACTAATCAACTTATACCATTGTCTGCTGCAAGCACCAAATCTTACGTTAATATCCAAAGCAGCACCAGTTTTATATGTAGTCCAAGCCGAGGAAGACAAGGATTGACACAGTTTCAGCCCCAAAAAGGAACTTGGGAAGAACCTGATGATGGGAGCAATAGTGAGTATGATGAAGAAGAAGATGAGGAAACGGAAGATGAAAACTATGGCTTTGAAAGTGATTGGGAAGAGGAAGAGATAACGTCATCAGCTGTTAATAAGGTTGAACAGCTTCTGGATCCTAAAGAAAGAGCAGTCTTGCAACAGAATGTGTCTCCAAACTTGGAAAAAATTTCAACTGAAAAATGGAGCCCACTGCACACTTTAGCGCTATCAACACAGATAAGATGTATGGATCAGCTGCTTGAAAGTGGTGTTGATATTGATCTTAAGAACAAGGTGGGTTTCTTCATATTTTGGTTTACAAGAAATAAAGAAGCTGTAATAAGCCATCTTTTACGGAAAGGTGCCAGTCCTCATGTCAAGGATAAGGTAAGAGCACATCTTGACATAGCTGCTGAAGCTGCTGACTGGTTTTCAATGAGCATTAGTATTCATATGGTCATTGCTGTAGTAGGATGGTTTTGTTCTCTGCTTCTCGAACCTTCGTTACAGTCTTCTGTGTTTCCTAAATTCTCTCGCCCCCAGATGGATGAGGATTTCGATATGCCCCCGCCGGAGGAGATGAACGAGGACTTCGATCTTCCCGACGATGCCCCCACTCTGAAGGTTGGAGAGGAGAAGGAGATCGGCAAACAGGGCTTCAAGAAGAAACTCCTTAAGGAAGGTGAAGGCTGGGAGACACCTGAGGTCGGCGATGAAGTTGAAGTTCATTACACGGGAACTTTGCTTGATGGGACCAAGTTTGATTCGAGCCGCGACAGAGGAACCCCCTTTAAATTTACTCTCGGACAAGGGCAAGTAATTAAAGGGTGGGATCAGGGTATTAATACCATGAAGAAAGGTGAAAATGCCATTTTCACCATCCCTCCTGAACTAGCATACGGTGAATCTGGTTCTCCTCCAACGATTCCTCCTAATGCTACTCTTCAATTTGATGTTGAGCTTCTGTCTTGGACCAGTGTGAAGGACATATGCAAGGATGGTGGCATACTTAAGAAAATACTTACTGAAGGAGAGAAATGGGAAAATCCCAAAGATCCAGATGAAGTTTTAGTTAAATTTGAAGTTCGACTTGAGGATGGAACGCTTGTATCAAAATCTGATGGAGTGGAGTTTACAGTGAGAGAGGGTTACTTTTGTCCTGCCTTTGCAAAGGCTGTGAAAACCATGAAGAAGGGAGAGAAAGTGCTCTTAACTGTGATGCCGCAATATGGTTTTGGTGAGAAGGGTAAAGCAGCACACGGTGATGAAGGTGCAGTTCCACCAAATGCATCCTTACAGATAACTCTTGAATTGGTATCTTGGAAAACTGTTTCAGAAGTAACTGAGGATAAGAAGGTAATTAAGAAAATCCTCAATGAAGGGGAAGGATATGAGCGTCCAAATGAAGGAGCTGTTGTGCAAGTGAAATTGATTGGAAAACTGCAAGATGGCACTGTCTTCTTGAAGAAGGGCCATGATAAAGAGCTGTTTGAATTCAAGACAGATGAAGAGCAAGTCATTGATGGACTTGATAGAGCAGTATTGACCATGAAAAAGGGTGAAGTAGCATTGTTGACTGTCGCACCTGAGTATGCCTTTGGTTCATACGAGTCCAAGCAAGAATTGGCTGTTGTTCCTGCCAACTCGACTGTTTACTATGAAGTTGAACTAGTATCATTTGTGAAGGAGAAGGAGTCCTGGGATATGAACACACAGGAGAAAATTGAAGGTGCTGGTAAGAAGAAAGAAGAAGGAAATGCGTTGTTTAAGAGTGGAAAATATTCTAAAGCCTCTAAAAGATATGAGAAGGCTGTCAAGTACGTAGAGTATGATTCTTCCTTCAGTGAAGAAGAGAAAAAGCAGGCCAAGGCACTGAAGGTTGCTTGCAATCTGAACAATGCGGCTTGCAAGTTGAAGTTGAAAAATTATAAAGAAGCTGAGAGATTGTGTACTAAGGTTCTGGATCTTGAAAGCTCAAACGTAAAGGCACTTTATAGAAGAGCACAGGCATATATCGAGTTGGCTGATTTGGATTTGGCGGAATTTGATATTAAGAAAGCTCTTGAGATAGATCCTAACAACAGGGATGTGAAGTTAGAGTACAGGACTTTGAAGGAAAAGGTGAAGGAGTTTAACAGAAAGGAGGCTCAATTTTATGGGAATATGTTTGCCAAGATGACTAAGCCGGATTCAAATGACAATAACAAAGCAGCGAACAAGGATGCTGAACCCATGAGCATTGACAGCCAAGCATAA 2625 0.4171 MVLPLFSHFCISCSSCINGNGFCNIYKGFFFKWILHLLRNSLKELQRILLLAVVVVFSEFHGDAEMSYWSPAYVFTNQLIPLSAASTKSYVNIQSSTSFICSPSRGRQGLTQFQPQKGTWEEPDDGSNSEYDEEEDEETEDENYGFESDWEEEEITSSAVNKVEQLLDPKERAVLQQNVSPNLEKISTEKWSPLHTLALSTQIRCMDQLLESGVDIDLKNKVGFFIFWFTRNKEAVISHLLRKGASPHVKDKVRAHLDIAAEAADWFSMSISIHMVIAVVGWFCSLLLEPSLQSSVFPKFSRPQMDEDFDMPPPEEMNEDFDLPDDAPTLKVGEEKEIGKQGFKKKLLKEGEGWETPEVGDEVEVHYTGTLLDGTKFDSSRDRGTPFKFTLGQGQVIKGWDQGINTMKKGENAIFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGILKKILTEGEKWENPKDPDEVLVKFEVRLEDGTLVSKSDGVEFTVREGYFCPAFAKAVKTMKKGEKVLLTVMPQYGFGEKGKAAHGDEGAVPPNASLQITLELVSWKTVSEVTEDKKVIKKILNEGEGYERPNEGAVVQVKLIGKLQDGTVFLKKGHDKELFEFKTDEEQVIDGLDRAVLTMKKGEVALLTVAPEYAFGSYESKQELAVVPANSTVYYEVELVSFVKEKESWDMNTQEKIEGAGKKKEEGNALFKSGKYSKASKRYEKAVKYVEYDSSFSEEEKKQAKALKVACNLNNAACKLKLKNYKEAERLCTKVLDLESSNVKALYRRAQAYIELADLDLAEFDIKKALEIDPNNRDVKLEYRTLKEKVKEFNRKEAQFYGNMFAKMTKPDSNDNNKAANKDAEPMSIDSQA 874
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele43g1002 874 FunFam Peptidylprolyl isomerase 333 451 - -
Lele43g1002 874 Gene3D - 152 265 IPR036770 -
Lele43g1002 874 SUPERFAMILY TPR-like 689 849 IPR011990 GO:0005515
Lele43g1002 874 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 593 684 IPR001179 GO:0003755
Lele43g1002 874 FunFam Peptidylprolyl isomerase 689 844 - -
Lele43g1002 874 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 360 448 IPR001179 GO:0003755
Lele43g1002 874 PANTHER PEPTIDYLPROLYL ISOMERASE 118 448 - -
Lele43g1002 874 SMART tpr_5 784 817 IPR019734 GO:0005515
Lele43g1002 874 SMART tpr_5 701 734 IPR019734 GO:0005515
Lele43g1002 874 SMART tpr_5 750 783 IPR019734 GO:0005515
Lele43g1002 874 Gene3D - 451 565 IPR046357 GO:0003755
Lele43g1002 874 SUPERFAMILY FKBP-like 570 702 - -
Lele43g1002 874 Coils Coil 817 837 - -
Lele43g1002 874 MobiDBLite consensus disorder prediction 125 149 - -
Lele43g1002 874 FunFam Peptidylprolyl isomerase 566 686 - -
Lele43g1002 874 Gene3D - 566 686 IPR046357 GO:0003755
Lele43g1002 874 ProSiteProfiles Ankyrin repeat profile. 189 221 IPR002110 GO:0005515
Lele43g1002 874 FunFam Peptidylprolyl isomerase 452 565 - -
Lele43g1002 874 Gene3D - 335 450 IPR046357 GO:0003755
Lele43g1002 874 SUPERFAMILY FKBP-like 452 568 - -
Lele43g1002 874 MobiDBLite consensus disorder prediction 848 874 - -
Lele43g1002 874 ProSiteProfiles TPR repeat profile. 784 817 IPR019734 GO:0005515
Lele43g1002 874 Pfam Tetratricopeptide repeat 784 817 IPR001440 GO:0005515
Lele43g1002 874 Gene3D Tetratricopeptide repeat domain 687 844 IPR011990 GO:0005515
Lele43g1002 874 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 471 561 IPR001179 GO:0003755
Lele43g1002 874 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 355 445 IPR001179 GO:0003755
Lele43g1002 874 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 587 681 IPR001179 GO:0003755
Lele43g1002 874 SUPERFAMILY FKBP-like 338 452 - -
Lele43g1002 874 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 476 565 IPR001179 GO:0003755
Lele43g1002 874 SUPERFAMILY Ankyrin repeat 179 253 IPR036770 -
Lele43g1002 874 MobiDBLite consensus disorder prediction 112 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele43g1002 Lele-ChrLele43 18555317 18569855 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele43g1002 305 849 Calmodulin-binding Proteins AT3G25230 80.692 0.0 882
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele41g0373 41 3019595 3027000 Lele43g1002 43 18555317 18569855 hybridization
Lele42g0358 42 3074742 3085237 Lele43g1002 43 18555317 18569855 hybridization