Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele43g0995 ATGGCAAAGTCTGGCGTGCTGGCGGTCGACTCTGATCCGACGGCTGCGGCGGCGGCGACGAATGTGTTGGAGTTGAAGAAGGAGTTGAACAGATTGGTGAAGTCCATCGTTGACGATGATGATTGCAGCATCCAAACCATTGATCAAGCTAAGGAAGCTCTTTCCGCTCTTAAGGACCTGAAGCTTCGAAAGAGACCATCGTCATCACCGTCTTCGTCTTTCATGCTAAACAGAAATTCCGCTTTTCCTGAAGAATTTAAGTGCCCTCTTTCTAAGGAATTGATGAGAGATCCTGTCATTGTGGCTTCTGGAAAGACATATGATAGGCCCTTTATTCAAAAATGGCTGAAAGCTGGGAACAGAACTTGTCCTCAAACACAACAAGTCCTCTCACACACTCTCCTCATTCCAAATCATCTCATAAGGGAGATGATAGAACAGTGGTGCAAGAACCATGGAGTGGAATTATCCAACCAACTTCACTATATTTACAATGAGGAAGACATAATAACAAAAGGGGATCGCGATCAGTTTCATTCTCTTCTCGAGAAGACGTCCTCTTCATCGCTTTCTGAGCAGAAAGCAGCCGCGAAGCAGCTTCGGTTGTTGACGAAGAAGATGCCTTTGTATAGAACACTCTTTGGTGAGACTCCACAAGCCATTTCTGAGATTCTCAAACCGATCTCTGCAAGCGACTCTTTTAACAACACTCATCCTGATCTCCAAGAAGACGTGATCACAACACTTTTGAACATCTCCATCCATGACAACAACAAGAAGCTTGTCGCACAAACTCCCTCGGTGATTCCAATCCTTGTGAAAGCCTTAAAATCGGGAACTATAGAAACTAGAAGCAATTCTGCAGCCACCCTTTTCACTTTATCTGCTCTAGACTCGAACAAGGAGCTTATCGGTAAATCTGGTGCCTTGAAGCCATTAATTGACCTCTTAGAAGAAGGCCATCCTTTAGCCATGAAAGATGTTGCTTCAGCAATTTTCACATTGTGCGTGGTTCATGAGAACAAGGCAAGAGCGGTGAGAGAAGGGGCGGTAAGTGTTATATTGAGGAAGATCTCAAGCCGGGTTTACGTCGATGAATTGCTCACGATCCTCGCCCTGCTCTCGAGTCATCAAAAGGCTGTTCAGGACATGGTAGATGTTGGAGCTGTTCCTAACTTGCTGAGCATCATGAGGAAGACGAATTGCGAACAAAACAAGGAGAACTGCATCGCGATTCTTCAGACTATATGTCAGTATGACAGAGGAAAATTGAAGGAGATGAAAGAAGAGGAGATTACATTTAGAACTATCACTGATCTTGCATTGAATGGAACTTCAAGGGCTAAGAGAAAAGCTAGTGGAATTCTTGAGAGACTTAACAGGGTTGTTAATATTACACACACTGCATAA 1410 0.4418 MAKSGVLAVDSDPTAAAAATNVLELKKELNRLVKSIVDDDDCSIQTIDQAKEALSALKDLKLRKRPSSSPSSSFMLNRNSAFPEEFKCPLSKELMRDPVIVASGKTYDRPFIQKWLKAGNRTCPQTQQVLSHTLLIPNHLIREMIEQWCKNHGVELSNQLHYIYNEEDIITKGDRDQFHSLLEKTSSSSLSEQKAAAKQLRLLTKKMPLYRTLFGETPQAISEILKPISASDSFNNTHPDLQEDVITTLLNISIHDNNKKLVAQTPSVIPILVKALKSGTIETRSNSAATLFTLSALDSNKELIGKSGALKPLIDLLEEGHPLAMKDVASAIFTLCVVHENKARAVREGAVSVILRKISSRVYVDELLTILALLSSHQKAVQDMVDVGAVPNLLSIMRKTNCEQNKENCIAILQTICQYDRGKLKEMKEEEITFRTITDLALNGTSRAKRKASGILERLNRVVNITHTA 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele43g0995 469 SUPERFAMILY ARM repeat 176 459 IPR016024 -
Lele43g0995 469 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 79 155 IPR013083 -
Lele43g0995 469 SUPERFAMILY RING/U-box 81 156 - -
Lele43g0995 469 SMART arm_5 255 296 IPR000225 GO:0005515
Lele43g0995 469 SMART arm_5 377 418 IPR000225 GO:0005515
Lele43g0995 469 SMART arm_5 297 337 IPR000225 GO:0005515
Lele43g0995 469 FunFam RING-type E3 ubiquitin transferase 81 155 - -
Lele43g0995 469 Pfam U-box domain 83 152 IPR003613 GO:0004842|GO:0016567
Lele43g0995 469 PANTHER U BOX DOMAIN-CONTAINING 43 459 - -
Lele43g0995 469 SMART Ubox_2 85 148 IPR003613 GO:0004842|GO:0016567
Lele43g0995 469 CDD RING-Ubox_PUB 86 128 IPR045210 -
Lele43g0995 469 FunFam RING-type E3 ubiquitin transferase 168 465 - -
Lele43g0995 469 ProSiteProfiles U-box domain profile. 81 155 IPR003613 GO:0004842|GO:0016567
Lele43g0995 469 Gene3D - 159 463 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele43g0995 Lele-ChrLele43 18495234 18497808 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele43g0995 144 469 U-box Gene Family AT3G07360 59.091 6.33e-134 387
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele41g0379 41 3095443 3098027 Lele43g0995 43 18495234 18497808 hybridization
Lele42g0362 42 3143403 3146055 Lele43g0995 43 18495234 18497808 hybridization