Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele43g0994 ATGGGGCCAAATGCAGGTTCTTTGTCGGCGGCGAAACTGGCGGAGCAACGTCGAATAGACGGAAATAATTGCTTCAAGAAAGATCGGTTCGGAGCTGCGATCGATGCTTATACCGAGGCAATTGCTCTAATGCCCAACAATCCGGTTTATTTCACGAATCGTGCTTTATGCCATCGCAAGCGGAATGACTGGACGAGAGTGGAGGAAGATTGTGGGAAAGCTATTCAACTTAATCCGAAGTCAGTCAAGGCCCACTATATGTTGGGACTTGCATTGCTGCAGAGACAAGAATATGCCAAGGGAATAGCAGAATTACAAAAGGCTTTGGATCTTGGGAGGGGAGCCAATCCTATGGGCTATATGGTAGAAGAGATCTGGCAGGAGCTAGCAAAAGCAAAATACCAAGAATGGGAACGTTCATCTACCAAGCGATCATGGGAATTGCAGAGCTTGAAAGAAGCTTGCGAGTCCGCTCTAAAGGAAAAGCATCTACATGATGTTTCTCAAACGGAAGGCGAAGGCTTTGTAGTTTTAGATGAAGATCCAACAACCCCATCAGAACAGCTAGCGGCTTTAGGAAGAGTGTTCGGTAAAGCTGCCGAGGATGATACCCCTACTGAGGTGCCAGATCACCTTTGCTGTAGAATCACACTCGAAATTTTCCGGGATCCTGTCATCACTCCAAGTGGTCTTACGTATGAGAGGGCAGTGATTCTTGACCATCTTGAGAAGGTGGGGAGGTTTGATCCAGTCACTCGAGAACAACTTAATCCGTCACAGTTAGTGCCAAACTTGGCCATTAAGGAAGCAGTTCAGTCATTCTTGGACGAACATGGATGGGCCTACAAGATAGATTAA 858 0.4674 MGPNAGSLSAAKLAEQRRIDGNNCFKKDRFGAAIDAYTEAIALMPNNPVYFTNRALCHRKRNDWTRVEEDCGKAIQLNPKSVKAHYMLGLALLQRQEYAKGIAELQKALDLGRGANPMGYMVEEIWQELAKAKYQEWERSSTKRSWELQSLKEACESALKEKHLHDVSQTEGEGFVVLDEDPTTPSEQLAALGRVFGKAAEDDTPTEVPDHLCCRITLEIFRDPVITPSGLTYERAVILDHLEKVGRFDPVTREQLNPSQLVPNLAIKEAVQSFLDEHGWAYKID 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele43g0994 285 ProSiteProfiles U-box domain profile. 207 281 IPR003613 GO:0004842|GO:0016567
Lele43g0994 285 SUPERFAMILY TPR-like 14 115 IPR011990 GO:0005515
Lele43g0994 285 SUPERFAMILY RING/U-box 200 282 - -
Lele43g0994 285 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 206 284 IPR013083 -
Lele43g0994 285 PANTHER E3 UBIQUITIN-PROTEIN LIGASE CHIP 9 283 IPR045200 GO:0000209|GO:0061630
Lele43g0994 285 Pfam U-box domain 208 280 IPR003613 GO:0004842|GO:0016567
Lele43g0994 285 SMART Ubox_2 211 274 IPR003613 GO:0004842|GO:0016567
Lele43g0994 285 CDD RING-Ubox_CHIP 208 274 IPR045202 -
Lele43g0994 285 Gene3D Tetratricopeptide repeat domain 8 170 IPR011990 GO:0005515
Lele43g0994 285 SMART tpr_5 14 47 IPR019734 GO:0005515
Lele43g0994 285 SMART tpr_5 48 81 IPR019734 GO:0005515
Lele43g0994 285 SMART tpr_5 82 115 IPR019734 GO:0005515
Lele43g0994 285 Pfam Anaphase-promoting complex, cyclosome, subunit 3 44 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele43g0994 Lele-ChrLele43 18484760 18491523 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele43g0994 10 284 U-box Gene Family AT3G07370 68.364 1.70e-141 397
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele41g0380 41 3101468 3108725 Lele43g0994 43 18484760 18491523 hybridization
Lele42g0363 42 3153175 3158267 Lele43g0994 43 18484760 18491523 hybridization