Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele43g0940 ATGCAAAGTTCTCTTCCTAGTTCAATTGAAGATGCTCTATTTCATGCATCTGATAAAGGGAAAGAAGATGCTCTATGTGACTGGATGCCTAGTGCTGAAACTTGGCAGGTGTGCCTGAAATGCAAAAAATACCATCTTTACTGCTGCAGAGAAGTTGAAGCAATGCAAGAGCAAGAGGATAGAAGGAATGACGATGCCCCATCCTGCAGAAAAGTTGAAGCAATGCATGAGCAAGAGGATAGAAGGAGTGGTGATGTTCCATGCTGCAGAAAAGTTGAAGAAATGCAAGAGCAAGAGGATAGAAGGAATGATGATGCCCCATGCTGCGGAAAAGTTGAAGCTATGCATGAGCAAGAGGATAGAAGGAATGGTGATGTTCCATGTTGCAGAAAAGTTGAAGAAATGCAAGAGCAAGAGGATAGAAGGAATGATGATGTTCCGTGCAGCTCAAACTGTATAAGTAGCTTAGATAGACCATCAACTGCCAGTACAATGACTGGAAATACTGTGCCTAATCTAGTTTACAGGAGAAAGAAGCTACGGAAGAATTCAACCGCACCCCTTTTAAAAGTAGGACCTATGTCTGAGCAAGCTAGTGCCAATTGCGCTTCATTAATAAGCCCCTATTCTCATAGTTTACCATTGGAGCATCAGCCAGCCGGCTTTCAAGTTGAGCAATATATTGAAATGGTTAAAGACCCCGTTGCACCCATTGTCTTATGCAAAACAGCAATGAATGACAGCACACCTAAAAATTTAGGTATTGACAGCATTAATGATAGTTGCTCCACATCAAAATCAGTTATGGAAATTGTTTCAGATTCCATAGAAACCGGAGTGGATGACACTGGCGAATGCTCCTCATCTAGTGTATTAGTCATGGATGTCCCTAGGGAAGACCTATCAGCAAAGGATTTCTGTATCAAAATTCTAAGAAGCCATGGACTCCTTGGAGGAGATTCTCATGCTGATACTGTAGCTTCTCAAGCACAGGCTACTACCTCTGGTAATGGTTGCAGTTCCAGGCCGTGCAAAATATGTGGCCATTTAGATGGCTCATTGAAAATACTTATATGTGATCATTGTGAAGAGGCATACCATCCATCCTGCATCATTCCGCGTATGAAAAAGTTACCAATTGATGAATGGATTTGTCATTCATGTATAAAAAAGAAGCAAAAAATTCTTAAGGAGATGATTATTAGAAGTTCACCAAATATCAACAGTGAAATGGAATTATGCAGATCTTCCTCAGTTAATGGAGGATTGAATCCTATACTGTTGATGTTGAATGATTCTGAGCCAAGTACAACTGGTGTACGGGTTGGTAAAGGTTTTCAAGCAGAAGTTCCTGAATGGTCAGGTCCAATAGGAAGTAATGATGACTGTGCTGAACCTTTGGAAATTGGTTCTTCAGAATTTTCCAGTTTCTCGGAAAAGAATCTCAAAAGGCCAACTAGACTCAGCTCCATTGGTAATTGGCTTCAGTGTCAAGTGGTCGTAGATAGAGCCAAAGGAACTATATGTGGGAAATGGTGCAGGGCTCCTCTTTTTGAAGTCCAAACTGATAATTGGGAGTGCTTCTGTGCCATCCATTGGGATCCAGCTCATGCTGATTGTGCCGTTCCTCAGGAGTTGGAAACAGATCAAGTTCTGAAGCAACTGAAGTATATGGAAATGGGGGGTTAA 1689 0.415 MQSSLPSSIEDALFHASDKGKEDALCDWMPSAETWQVCLKCKKYHLYCCREVEAMQEQEDRRNDDAPSCRKVEAMHEQEDRRSGDVPCCRKVEEMQEQEDRRNDDAPCCGKVEAMHEQEDRRNGDVPCCRKVEEMQEQEDRRNDDVPCSSNCISSLDRPSTASTMTGNTVPNLVYRRKKLRKNSTAPLLKVGPMSEQASANCASLISPYSHSLPLEHQPAGFQVEQYIEMVKDPVAPIVLCKTAMNDSTPKNLGIDSINDSCSTSKSVMEIVSDSIETGVDDTGECSSSSVLVMDVPREDLSAKDFCIKILRSHGLLGGDSHADTVASQAQATTSGNGCSSRPCKICGHLDGSLKILICDHCEEAYHPSCIIPRMKKLPIDEWICHSCIKKKQKILKEMIIRSSPNINSEMELCRSSSVNGGLNPILLMLNDSEPSTTGVRVGKGFQAEVPEWSGPIGSNDDCAEPLEIGSSEFSSFSEKNLKRPTRLSSIGNWLQCQVVVDRAKGTICGKWCRAPLFEVQTDNWECFCAIHWDPAHADCAVPQELETDQVLKQLKYMEMGG 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele43g0940 562 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 258 400 IPR013083 -
Lele43g0940 562 SMART PHD_3 343 389 IPR001965 -
Lele43g0940 562 PANTHER TRANSCRIPTION INTERMEDIARY FACTOR 266 400 - -
Lele43g0940 562 SUPERFAMILY FYVE/PHD zinc finger 333 393 IPR011011 -
Lele43g0940 562 Pfam ELM2 domain 440 552 IPR000949 -
Lele43g0940 562 ProSitePatterns Zinc finger PHD-type signature. 344 388 IPR019786 -
Lele43g0940 562 ProSiteProfiles Zinc finger CW-type profile. 488 548 IPR011124 GO:0008270
Lele43g0940 562 ProSiteProfiles Zinc finger PHD-type profile. 341 391 IPR019787 -
Lele43g0940 562 Pfam PHD-finger 344 390 IPR019787 -
Lele43g0940 562 FunFam uncharacterized protein LOC106759733 isoform X4 492 557 - -
Lele43g0940 562 Gene3D - 492 557 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele43g0940 Lele-ChrLele43 17630410 17634961 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele43g0940 344 417 C2H2 Transcription Factor Family AT3G01460 29.487 6.44e-06 47.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lele43g0940 ELM2 0.00013 No_clan