Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele43g0924 ATGCTGCTGGGGCAAGCTCCTCCTGTTGGCTTCAGAACCAAACCCAATTGCTTGGAATTGCATATTCAAAGCAATTCGCGTCTCTTTTCCTTTGCTCAGACTCGTTTATATGACGCCCCATGTACGAAAATGCTGCGAACAAGTATTGGAAATTCATTTCTCGTTAGAGCTGGGCGTTCTCCCACCCCCAAAGACATTCTTTCTTGGAACCCTAACACCGCCAACGATGTTTTGAGCTCGACTGTAGAGAATTCAGCAGATATAAGCATTGTAACTGAAGGCTTTGAGCGTGACTCAGTTGTTACAAATAGTGATTCTACAAAAAAATCTAAGGGGAGGTTATCTGAAAGTTTTGGCAAACTGAAAGCACAAAAAGTCAAGGCCCTCATCCACAGAACTATTCACAAGAAGCGGGAAAGAAGCATTAATGATGATAACCTAGTTGTAGAACATCCAGAATTAGGAATAGATGATTGGGAACAATCTGAGGGATCTAATTCTCATGTAGGATATCAGAACACTCCCAATAAATCTCGAAACAATGACAGCAGAATAAAGAGTTCAGGTATATTAGTTGAAAGACATTCTACCTCACGTTCAAAAGGATGGGGTGGTGGAGAATCTTCACGTACCTTTAAGACTGAATCACAAAAACTGATAAAGGAACAAAGAAAACCATTGCCTGACAGTGACTTTTTCAGTCGAAAGTCCTTCAAAGATCTACAGTACAGTGAATATATGATTGAATCTCTGGCAAAGCAATTTTATCGACGGCCTTCACATATACAAGCCATGGCATTTGAACCAGTATATACTGGAAAGAGTTGTATAATAGCTGATCAAAGTGGTTCTGGAAAGACTTTAGCATATCTTGTTCCAATAATTCAGAAGCTTAGACAAGAAGAATTGGAAGCACTTGCCCATTCCTCTTCACAAGCTCCTCGAGTGGTTATATTAGCACCAACAGCTGAGTTAGCTTCTCAGGTGTTAGCTAATTGCCGATCAATGTCAAAATCTGGGGTTCCATTCAAATCTATGGTTGTAACAGGTGGCTTTCGACAGAGAACTCAACTGGAGAATTTAGAGCAGGGTGTTGATGTTTTAATAGCAACACCTGGCCGTTTTATGTTCCTCATCAAGGAAGGCTTTTTGCAGTTAACAAATTTAAGATGTGCGGTGTTGGATGAGGTAGATATACTTTTTGGTGATGAGGATTTTGAAGTGTCGCTTCAGTGCTTGATCAATTCTTCGCCAGTTACCACACAATATTTATTTGTGACTGCAACTTTACCAAAGGACATTTACAATAAACTAGTTGAAGTTTTTCCTGATTGTGGAGTGATCATGGGACCTGGGATGCACCGGATAAGCTCTCGACTTGAGGAGGTTCTAGTTGATTGCAGTGGAGCTGATGGGGAAGAAAAATCCCCCGATACAGCATTTCTTAATAAGAAAACAGCTCTTCTACAGATTGCGAAAGCAAGTCCTGTCCCAAAAACCATTGTCTTTTGCAACAAAATTGAAACCTGCAGAAAAGTCGAGAACGCATTGAAGCGTTTTGATAGGAAAGAAACTCGTGTACAAGTTCTACCTTTCCATGCCGCTATGACGCAGGAATTACGGCTTGCCAATATGGAAAAGTTTACACGTTCTCAACCAAAGGATGTCTCCCAGTTCCTGGTTTGCACAGACAGAGCTTCGCGGGGGATTGACTTTACCGGAGTGGATCATGTCATACTTTTCGACTTTCCACGTGATCCAAGCGAATATGTGCGCCGTGTTGGAAGAACTGCAAGAGGTGCTGCTGGAAAGGGCAAGGCATACGTCTTTGTGGTTGGCAAGCAAGTATCACTTGCACGTAAAATCATGGATAGAAATAGGAAGGGTCACCCTCTACATGATGTGCCTTCTGCCTATGAGCTCATGAAGTAG 1932 0.4187 MLLGQAPPVGFRTKPNCLELHIQSNSRLFSFAQTRLYDAPCTKMLRTSIGNSFLVRAGRSPTPKDILSWNPNTANDVLSSTVENSADISIVTEGFERDSVVTNSDSTKKSKGRLSESFGKLKAQKVKALIHRTIHKKRERSINDDNLVVEHPELGIDDWEQSEGSNSHVGYQNTPNKSRNNDSRIKSSGILVERHSTSRSKGWGGGESSRTFKTESQKLIKEQRKPLPDSDFFSRKSFKDLQYSEYMIESLAKQFYRRPSHIQAMAFEPVYTGKSCIIADQSGSGKTLAYLVPIIQKLRQEELEALAHSSSQAPRVVILAPTAELASQVLANCRSMSKSGVPFKSMVVTGGFRQRTQLENLEQGVDVLIATPGRFMFLIKEGFLQLTNLRCAVLDEVDILFGDEDFEVSLQCLINSSPVTTQYLFVTATLPKDIYNKLVEVFPDCGVIMGPGMHRISSRLEEVLVDCSGADGEEKSPDTAFLNKKTALLQIAKASPVPKTIVFCNKIETCRKVENALKRFDRKETRVQVLPFHAAMTQELRLANMEKFTRSQPKDVSQFLVCTDRASRGIDFTGVDHVILFDFPRDPSEYVRRVGRTARGAAGKGKAYVFVVGKQVSLARKIMDRNRKGHPLHDVPSAYELMK 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele43g0924 643 Pfam Helicase conserved C-terminal domain 486 600 IPR001650 -
Lele43g0924 643 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 236 264 IPR014014 GO:0003724
Lele43g0924 643 SMART helicmild6 511 601 IPR001650 -
Lele43g0924 643 Gene3D - 476 640 IPR027417 -
Lele43g0924 643 SMART ultradead3 255 463 IPR014001 -
Lele43g0924 643 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 161 640 - -
Lele43g0924 643 MobiDBLite consensus disorder prediction 160 213 - -
Lele43g0924 643 CDD SF2_C_DEAD 484 611 - -
Lele43g0924 643 MobiDBLite consensus disorder prediction 158 223 - -
Lele43g0924 643 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 483 643 IPR001650 -
Lele43g0924 643 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 267 448 IPR014001 -
Lele43g0924 643 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 270 612 IPR027417 -
Lele43g0924 643 Pfam DEAD/DEAH box helicase 261 434 IPR011545 GO:0003676|GO:0005524
Lele43g0924 643 Gene3D - 194 445 IPR027417 -
Lele43g0924 643 CDD DEADc 247 436 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele43g0924 Lele-ChrLele43 17432260 17437850 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele43g0924 237 622 Eukaryotic Initiation Factors Gene Family AT3G19760 27.202 8.09e-28 114