Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele43g0898 ATGAAGCTCACCGTCAAGACTTTGAAAGGAAGCCATTTCGAAATCAGGGTTCAACCTTCAGACACAGTCATGGCTGTTAAGAAGAATATAGAAGATGTACAAGGAAAAGATAATTACCCATGTGGACAGCAATTGCTTATTTTTAATGGCAAGGTTTTGAAAGATGAAACTACACTAGCAGAGAACCGGGTCTCTGAAAATGGATTTCTTGTTGTCATGCTTAGCAAGAATTCAACCATCAATGATGATGATTATTTGCAATTGTGTGGCATAAGTGGTAATGTTGTCATTGTAATGTTTAGTAAAACTTCAAGTTCAGCTGGGGCTTCATCCACTCAGCCTGCTAACAATCCATCTACAACTGCATCAACCCAAAATTCCCCTCCTCCTGCACTTGAACCTCCAGTTCAAAGTACTCAGGCTATGGTGAACAGTTCATCTCCGGCAAATGTCACAGCTACAAATGTGCCTGTGGATACTTATGGTCAAGCTGCTTCAAATTTAGCTGTCGGTGGTGATCTTGAGCGGACTGTTCAACAAATTATGGACATGGGAGGTGGCAACTGGGACAGAGATACAGTTATACGTGCTCTTCGGGCAGCTTATAATAACCCAGAGCGTGCTGTGGATTACTTGTATTCTGGAATCCCTGAAGCAGCAGAGGTTGCCATACCAGTTCCTCACTACCCAGCCAATCAGACAACTGAAACAGGCGGGGCCACTGCTGGAGGTGCTTCTTTGGCACCTAATACATCACCATTGAACATGTTTCCGCAGGGGACAATTTCTGGTGCTGGTGCTGGACTTGGATCTCTGGAATTCCTTAGAAACAACCCCCAGTTTCAAGCATTGCGATCAATGGTGCATTCTAATCCTCAAATTCTGCAGCCTGTACTTCAAGAGCTTGGAAAGCAGAATCCTCATCTATTAAGACTAATTCAGGAGCACCATGCTGAATTTCTCCAGTTAATGAATGAACCCATGGAAGCTTCTGAAGGCTTTGGATCCCTTCAATTGGAGGATTTCTCATTTCACTCAATCTTTAACCCTGGACTGTCCAAATCAGACATGTTCGATCAGTTCATCATAGCCTCAGTCATAGAGGCATTTTTGGCATGTGACCGGGATGAGCAATTGGCAGCCAACTACTTACTGGAGAATGCTGGAGATTTTGAGGATTGA 1182 0.4374 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIFNGKVLKDETTLAENRVSENGFLVVMLSKNSTINDDDYLQLCGISGNVVIVMFSKTSSSAGASSTQPANNPSTTASTQNSPPPALEPPVQSTQAMVNSSSPANVTATNVPVDTYGQAASNLAVGGDLERTVQQIMDMGGGNWDRDTVIRALRAAYNNPERAVDYLYSGIPEAAEVAIPVPHYPANQTTETGGATAGGASLAPNTSPLNMFPQGTISGAGAGLGSLEFLRNNPQFQALRSMVHSNPQILQPVLQELGKQNPHLLRLIQEHHAEFLQLMNEPMEASEGFGSLQLEDFSFHSIFNPGLSKSDMFDQFIIASVIEAFLACDRDEQLAANYLLENAGDFED 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele43g0898 393 MobiDBLite consensus disorder prediction 137 151 - -
Lele43g0898 393 Gene3D - 167 217 - -
Lele43g0898 393 SMART uba_6 174 214 IPR015940 -
Lele43g0898 393 FunFam UV excision repair protein RAD23 B 262 328 - -
Lele43g0898 393 Pfam UBA/TS-N domain 175 212 IPR015940 -
Lele43g0898 393 PRINTS DNA repair protein Rad23 signature 298 320 IPR004806 GO:0006289
Lele43g0898 393 PRINTS DNA repair protein Rad23 signature 375 390 IPR004806 GO:0006289
Lele43g0898 393 PRINTS DNA repair protein Rad23 signature 360 374 IPR004806 GO:0006289
Lele43g0898 393 FunFam UV excision repair protein RAD23 homolog 167 217 - -
Lele43g0898 393 MobiDBLite consensus disorder prediction 106 151 - -
Lele43g0898 393 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 382 - -
Lele43g0898 393 SUPERFAMILY UBA-like 172 222 IPR009060 GO:0005515
Lele43g0898 393 Gene3D - 1 77 - -
Lele43g0898 393 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 175 215 IPR015940 -
Lele43g0898 393 MobiDBLite consensus disorder prediction 106 127 - -
Lele43g0898 393 SUPERFAMILY Ubiquitin-like 1 78 IPR029071 -
Lele43g0898 393 CDD Ubl_Rad23 1 74 - -
Lele43g0898 393 Pfam XPC-binding domain 272 327 IPR015360 GO:0003684|GO:0006289|GO:0043161
Lele43g0898 393 Gene3D - 262 328 IPR036353 GO:0003684|GO:0006289|GO:0043161
Lele43g0898 393 SMART CBM 270 313 IPR006636 -
Lele43g0898 393 SUPERFAMILY XPC-binding domain 269 332 IPR036353 GO:0003684|GO:0006289|GO:0043161
Lele43g0898 393 TIGRFAM rad23: UV excision repair protein Rad23 1 336 IPR004806 GO:0006289
Lele43g0898 393 Pfam Ubiquitin family 3 76 IPR000626 GO:0005515
Lele43g0898 393 SMART ubq_7 1 75 IPR000626 GO:0005515
Lele43g0898 393 FunFam UV excision repair protein RAD23 1 80 - -
Lele43g0898 393 ProSiteProfiles Ubiquitin domain profile. 1 79 IPR000626 GO:0005515
Lele43g0898 393 Gene3D - 361 391 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele43g0898 Lele-ChrLele43 16612711 16618557 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele43g0898 1 74 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 40.541 1.63e-08 51.2