Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele43g0880 ATGGGTTCTTCTTTTCTGAACACCCCATATAAGCCATGGACGCCTGCAGATGCTGTTCTTCAAGATTGTTCTCAAGGAATCTGCAGCTTCTATTGCCCTCAATGGTGCTCCGTCGTCTACCCTCCTCCTCCTTTACCTTCTCTCACCGCCATCGGAGTTGCCGCCACCGCCGGTGATGATGACTCTTCTTCATTTGGGCTCTCTCCCCTCATAGTCGCTCTCATCGGAATCCTAGGAAGTGCTTTCGTCTTAATCACTTACTACACTATCATCTCTCGATTCTGCACAAGACGAACACGAATCCACCAAAACGACACTAACCAATGGGTAAACGACAATGATGAGTCGGCGATTCAAGCCTCGTCTTCTTCCGCTAATACCGGCGGCGGCGGCCTAGACGACGCCGTCATCACATCTATCACAGTATGTAAGTACACGAAAGGAGATGGATTAGTCGAAGGTACGGATTGCTCTGTTTGTCTCAGCGAATTTCAAGATTGCGAGAGCTTGAGATTGTTACCTAAATGCAACCACGCGTTTCATCTTCCTTGTATCGATACATGGTTGAGATCGCATTCGAGTTGTCCTCTATGCAGATCCAATATCGTCGAATCTAACACTTGTTCATCATCATCATCATCTTCTTCTGGTAATTTACCGAATCAAAGAGAGAATTCTCTGTTGCAGGAAGCTTCGCGAACACACAGCGTGAATGTGTCTGCGTTGGAATACCTGTATAGTAACGATACAGTGATAGTGATTCAGGGTTCCGAACAGGAAATTCAGGTCGGTTTTGCAGGGAATAATTTGGAGATGAATGGGAGTGAATCGAATCAACGAAGTATGTTGTTGATTGCTGATATACTAAGGAGTAGTGAAGATGATGAAGATAAGGATGAAGAAATCGAGATTGGATCGTCGAAGGAAAATCGCAGAGAAGAAGAAAAGAGGAAAGTGGTATCGGAATAA 969 0.452 MGSSFLNTPYKPWTPADAVLQDCSQGICSFYCPQWCSVVYPPPPLPSLTAIGVAATAGDDDSSSFGLSPLIVALIGILGSAFVLITYYTIISRFCTRRTRIHQNDTNQWVNDNDESAIQASSSSANTGGGGLDDAVITSITVCKYTKGDGLVEGTDCSVCLSEFQDCESLRLLPKCNHAFHLPCIDTWLRSHSSCPLCRSNIVESNTCSSSSSSSSGNLPNQRENSLLQEASRTHSVNVSALEYLYSNDTVIVIQGSEQEIQVGFAGNNLEMNGSESNQRSMLLIADILRSSEDDEDKDEEIEIGSSKENRREEEKRKVVSE 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele43g0880 322 PANTHER RING-H2 FINGER PROTEIN ATL16 60 279 IPR044600 GO:0016567|GO:0016740
Lele43g0880 322 MobiDBLite consensus disorder prediction 303 322 - -
Lele43g0880 322 FunFam RING-H2 finger protein ATL54 132 205 - -
Lele43g0880 322 Pfam Ring finger domain 156 199 IPR001841 -
Lele43g0880 322 SMART ring_2 157 198 IPR001841 -
Lele43g0880 322 CDD RING-H2_EL5_like 156 199 - -
Lele43g0880 322 SUPERFAMILY RING/U-box 151 205 - -
Lele43g0880 322 MobiDBLite consensus disorder prediction 291 322 - -
Lele43g0880 322 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 117 204 IPR013083 -
Lele43g0880 322 ProSiteProfiles Zinc finger RING-type profile. 157 199 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele43g0880 Lele-ChrLele43 16150284 16151252 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele43g0880 6 314 C3H Transcription Factor Family AT5G17600 40.854 3.37e-64 205