Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele43g0866 ATGGGGGCTGATGCTAGTAGCTCCCTATTGGATGTTGTAAATTTCAGAATAGACAACAGCATGTTAGTACCCATTGTTTCCCAAGTTACTTCATCTGATACCGATAAGGTTGGCAATACAGATGACTCCCATAAAGATCAAGATTTTCCATGTTATAATCCTAAGGGTCTGCATCATTCCAAATGCCAGAATGTACGACTTGAGCGCTACCTTGGCTGTGATGTGACTGATGTGTTGGATGGTTTCATTCGAACCAGGCCATACAAGATGGACACTCGAAAAGATAATTCTGAGGATGATGAATTGTCAATGCCATTGTCATCCCTGATTGGTTTGCAAAAAAGTTCTGGGGTGAAGGACGAAGACGTTGGACTAATGTTCAATAACTTGAAGTCCCACAAAAAGCTTAAAGTGAATCAAAGGAGGCCAATATCTAAGGAGTTGAATTCAGGTGATGCCAATAAAAATGAAATTCGGCCTCAACTTGCCATTGTTCTTGTTCCTCAAGAATGTGATCCTATTAACATTGAGCATTTTGATGCCAACGCTAAGGTCTCTAAATATTACACGCAAAGAAATGTTGAATTTCCTGCCAAATATTATCACATGATGGGTAGTCCTGAACCAAAGAGGAATGATATGAATTTGTTAACCTTTGAATCCTATAATCATTTTTCAAAGATTCTAGATATTGAAGATCATGTTGAAGAGATTGATGATATTGCTGCCCAATGTTATCATAATCATGGCACCCCTAAATTGAACAGGAATAATTCATTTGGTTTGGATGATATGGATTTTGAAGGAAGGTCCTTAAGTGCAGGACAAAAGAGGGAAATAACGGCACCCCAAACAGAGGATGAGGAAGAAACCGATGAACCAGATATATTGTGGAGAGAAATGGAAGTTTCATTGGCATCGAGCTATTTTGAAGAAGTCATAGAGGGTGCTGCTGTTTTTAGTGAGACCTGGGAAAAAACTGATTCACGTTGTTGCCATGATTATAGAATGGATGAAGAAATTGGAATTTACTGTCGCTTATGTGGCATCTTGGAACGTTCAATGTGGCACCATGAGATGAAGCAATGCGGTGGAGAAGGTTCAGAACCAGAGCAGAAGGCTGATGAAAATGATGGTTTCCATCTTTTGTTGACTGATGCTTTGCCTGATCAACCAATAACTGGAGAAAGTGATAATATATGGGCATTAATTCCTGAACTTAGGTGGAAATTGCACACCACCAACAAAAAGCTTTTGAGTTTCTTTGGAAAAAATTTGCTGGGTCTATGGACCCCACACTTACGGAAGCAGCATCCAAAAAGAGAGGGAAGTGACCATTGGTTCTTGCTCCGAAGACAACACTTTGTACATTGCCGTAGAACCTATCGAGCATTCAAGCAGAATACAGTGGTTTTTCATGGTGATCCAAAGCCAACTGATGATGTCAAGCATACTTTGGATATCCTGGAAAAGATACAAAAGTGGCACGCACGCCCAAGTGTTCTAGTCATGGGTTATACTTCATTTTTAACATTGATGCGAGAGGATTCAAAGTTTTCTCACAGAAAGTACGTGGCTAAAGTATTAAGGGGAAGTCCTGGTACATTGTTTCAGAACAATTTCTGTGAATACTTCAACACTCTTTGGTTGGCCAGACCAAACTTTGCTTTTGAAGTGTTGAAAAAAGTGGACCCTAAGTATAAGAGGAAAATGAAAGGAACAGGAAAAGCACGTCATTTAATAGAGGCGCATCAAATGCAGGGTCTGAACATGTTGAGAAAGATGACCAGTGGTTTTATAGATGTTTATGAAAATGGGAATTCAGAGGATCTTCCTGGTTTACAAATCTATACATTATTAATGAATACTACTGATATACAGCATGAGATTTTGAATAAACTCCAGAAGAAAATGTCTGGGTGCAATGGATATCCTTTGGAGTTGGAACTTTTGATAACCCTTGGATCGATACATCCTTGGAATGAGAAAATTCTAATGTTTTGCCATAACATCGCACCCGTGAGGTTATTTGCAGAATTTATTGAGAAGTTCTTTGGATGGTATAGAGGTCGAGAAGTCTTAGTTCTTACTGGGGAGCTAGAGCTCTTTGAACGAGGAAGGATAATGGATAAGTTTGAGGATCCTAATGGAGCATCAAAGATACTTACTTCAATTTCATCTTGTGCTGAAGGCATTAGTTTGACAGCAGCCTCTAGGGTGATTTTGTTGGATTCAGAATGGAATCCATCCAAGACAAAACAGGCTGTTGCACGTGATTTTCGTCCTGGTCAGCAAAAGATGGTTTATGTGTACCAGCTACTGGCAACAGGCACATTGGAGGAAGATAAGTATCGAAGAACCACTTGGACAGAGTGGGTTTTCAGCATGATTTTTAGCGAAGAATTTGTGCAAGACCCTTCCCGATGGGGAGAAGAAAAGATTGAAGATGATGTACCGCGAGAAATGGTTGCAGAAGACCGCTCCAATTCATTCCATATGATTATGAAGAATGAAAAGGCATCCACAAACTGA 2532 0.3977 MGADASSSLLDVVNFRIDNSMLVPIVSQVTSSDTDKVGNTDDSHKDQDFPCYNPKGLHHSKCQNVRLERYLGCDVTDVLDGFIRTRPYKMDTRKDNSEDDELSMPLSSLIGLQKSSGVKDEDVGLMFNNLKSHKKLKVNQRRPISKELNSGDANKNEIRPQLAIVLVPQECDPINIEHFDANAKVSKYYTQRNVEFPAKYYHMMGSPEPKRNDMNLLTFESYNHFSKILDIEDHVEEIDDIAAQCYHNHGTPKLNRNNSFGLDDMDFEGRSLSAGQKREITAPQTEDEEETDEPDILWREMEVSLASSYFEEVIEGAAVFSETWEKTDSRCCHDYRMDEEIGIYCRLCGILERSMWHHEMKQCGGEGSEPEQKADENDGFHLLLTDALPDQPITGESDNIWALIPELRWKLHTTNKKLLSFFGKNLLGLWTPHLRKQHPKREGSDHWFLLRRQHFVHCRRTYRAFKQNTVVFHGDPKPTDDVKHTLDILEKIQKWHARPSVLVMGYTSFLTLMREDSKFSHRKYVAKVLRGSPGTLFQNNFCEYFNTLWLARPNFAFEVLKKVDPKYKRKMKGTGKARHLIEAHQMQGLNMLRKMTSGFIDVYENGNSEDLPGLQIYTLLMNTTDIQHEILNKLQKKMSGCNGYPLELELLITLGSIHPWNEKILMFCHNIAPVRLFAEFIEKFFGWYRGREVLVLTGELELFERGRIMDKFEDPNGASKILTSISSCAEGISLTAASRVILLDSEWNPSKTKQAVARDFRPGQQKMVYVYQLLATGTLEEDKYRRTTWTEWVFSMIFSEEFVQDPSRWGEEKIEDDVPREMVAEDRSNSFHMIMKNEKASTN 843
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele43g0866 843 CDD SF2_C_SNF 661 774 - -
Lele43g0866 843 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 645 815 IPR001650 -
Lele43g0866 843 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 610 805 IPR027417 -
Lele43g0866 843 MobiDBLite consensus disorder prediction 272 294 - -
Lele43g0866 843 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 65 433 IPR044567 GO:0080188
Lele43g0866 843 Pfam Helicase conserved C-terminal domain 661 761 IPR001650 -
Lele43g0866 843 Gene3D - 621 839 IPR027417 -
Lele43g0866 843 SMART helicmild6 675 763 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele43g0866 Lele-ChrLele43 15731327 15734914 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele43g0866 689 781 RAD5 or RAD16-like Gene Family AT5G43530 35.484 9.94e-11 63.9