Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele43g0846 ATGGTGAAGAGAGGGGCTGCAGCTGCGGCCAGGAGAGGGGGCAGAGGAGCGCCGAAGGCTGCCCAGAATCAGCATAATCTTGATTCTGTACAAGAGGTTGTGAAGCTTGAAGAAAAACAGGTCGTTGAGGAGAAGACCGTTGTCGAGGAGAAACCTGTCGTCGAGGAGAAACCCGTTGAAGAGAAGCAAGTAGGTATTGACATGAATCAGATGGCTTTTGATATTAACCAAGTTGCTTCAGAGGCTGAAGAAGCGAATCCTGTCACAAATGGGTCGGCTGCTGTGAAAAAAGACGAAGAGGAGATTAAGGAGTCAATAGATGAATATGAAAAAGATGAACGCTTGGATCTGGAGGATAATGATCCAGAGTATGAACCTGAGGAGTATGGTGGAGTTGATTATGATGAGAAGGAAATTGAGCAAGATGATGTTCAGGAGGTGGGAGATGAGGTAGAGGAAGAACCTGCCGAGAATTTAGGTGAAGAGGAGGGTGATATGGTTGAGGAGGAAGTGGAAGACGTTCATGGAGAACTTGAGGGTGAAGAGGATGACAAGCATCCTGGAGAGGGGCATGAGCGTGCGGAGATTGCTGATGTAGAAGATGAACACCATGAAGGTTTGAAAGAGAGGAGAAAGCGGAAGGAATTTGAAGTTTTTGTTGGAGGCTTAGATAAAGATGCTACTGCGGATGATCTGAGGAAGGTTTTTAGTGCAGTTGGTGAGGTTACTGAAGTGAGGCTTATGATGAATCCTCAGACTGAAAAGAATAAGGGTTTTGCATTCTTACGATTTGCAACTGTGGAACAAGCTAAACGAGCTGTAGCAGAGCTAAAAAATCCAGTGATTAATGGCAAAAAATGTGGGGTAACCCCCAGTCAGGACAGTGACACCCTCTTTTTGGGTAACATATGCAAGACATGGACAAAGGAAGCTTTAAAGGAGAAGTTAAAGCATTATGGAGTTGACAATGTGGAGGATCTGACTTTAGTAGAAGATAGTAATAATGAGGGAGTGAATCGCGGATTTGCCTTTTTAGAATTTTCATCTCGGTCAGATGCTATGGATGCCTTTAAGCGATTGCAGAAGAGAGATATCGTGTTTGGAGTTGATAGGCCTGCAAAGGTTTCCTTTGCAGATTCCTTTATTGACCCGGGTGATGAGATTATGGCGCAGGTCAAAACTGTATTTGTTGATGGTCTGCCCCCCTCATGGGATGAGGATCGTGTACGGGGTCTTCTTAAGAGATATGGAGAGATTGAGAAGATTGAACTTGCCAGAAACATGTCTTCTGCTAAGAGGAAGGACTTTGGATTTGTTACATTTGATACCCATGAAGCTGCTGTGACATGTGCCAAAAGCATTAATAATGCTGAGATAGGTGAAGGAGACAGTAAGGCAAAAGTTAGGGCAAGATTATCGAGACCACTTCAGAGACACCATGGAAAACATGGTGCTCGTGGGGAGTTTCGGTCTAGTCGTGCTTCTGGAAGAGTCACAAGGCCTTCATGGAGTCGACCAGCACCTCATAGTTTACGTGCCTGTGGGATAAGGGGCATTAGTAGTCGTGTTCCTTCAGTTAGGCCTATTAGTATGAGAGATAGACGTCCAGCCATGCCAATGACAGTAAAAGCTAGGCCAGTGGCTCCTCCTGCTAGATCCTATGATAGGAGACTGGCTGTTCTTGCACATCCAAAAAGTAACATGAAGAGAGATTATGGTCGGCGTGAGGATTTGCCACCTCCAAGAAGTAGAGTAGCTCCAGATTACAGCTCTCGGGTGGCCTCTGAGAGACGCTCATCTTATAGGGACTATCATGCCCGTGGCCCCACCTACTCTGAGCTTCCTAGAAGTACTTCATCTCGTGTGGCACCTAGGAGGGGTTATGTGGATGATGGCTATGGTCAAAGATTTGAGAGGCCTCCTCCTCCTCCACCTCCACATCCAAGTTACCGTGAAGGACACCCTCTTGACTACAATACTCTCTCTAGCTCAAAGCGCCAATATGCTGCCATAGATGATGTTCCTCCACGGTATGCAGACAGTGGTGCTCGCCAATCGAGAGCACGATTGGACTATGACTATGGCGGTAGTACTTCACAGTATGGAGATGCTTATGGTGATAGAATTGGAAGATCTAGTATGGGCTATAGTGTTACAGTGGAGGTTCTTTTGGTGGCAGTGATGTTGGTGGTATGCACTCCTCCACTTATGGTGCTGATTACATGTCTCGTGGAAATGATGTTGATGGTGGCGCATACTCATCCCTATATCCTGGCAGAGGTGTGGGTGGTGGTAGTAGTTACGTGGGTGGTAGTGGGTCTGGGTCTTATTATTAAGATATGA 2343 0.4622 MVKRGAAAAARRGGRGAPKAAQNQHNLDSVQEVVKLEEKQVVEEKTVVEEKPVVEEKPVEEKQVGIDMNQMAFDINQVASEAEEANPVTNGSAAVKKDEEEIKESIDEYEKDERLDLEDNDPEYEPEEYGGVDYDEKEIEQDDVQEVGDEVEEEPAENLGEEEGDMVEEEVEDVHGELEGEEDDKHPGEGHERAEIADVEDEHHEGLKERRKRKEFEVFVGGLDKDATADDLRKVFSAVGEVTEVRLMMNPQTEKNKGFAFLRFATVEQAKRAVAELKNPVINGKKCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGVNRGFAFLEFSSRSDAMDAFKRLQKRDIVFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPPSWDEDRVRGLLKRYGEIEKIELARNMSSAKRKDFGFVTFDTHEAAVTCAKSINNAEIGEGDSKAKVRARLSRPLQRHHGKHGARGEFRSSRASGRVTRPSWSRPAPHSLRACGIRGISSRVPSVRPISMRDRRPAMPMTVKARPVAPPARSYDRRLAVLAHPKSNMKRDYGRREDLPPPRSRVAPDYSSRVASERRSSYRDYHARGPTYSELPRSTSSRVAPRRGYVDDGYGQRFERPPPPPPPHPSYREGHPLDYNTLSSSKRQYAAIDDVPPRYADSGARQSRARLDYDYGGSTSQYGDAYGDRIGRSSMGYSVTVEVLLVAVMLVVCTPPLMVLITCLVEMMLMVAHTHPYILAEVWVVVVVTWVVVGLGLIIKI 780
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele43g0846 780 MobiDBLite consensus disorder prediction 111 178 - -
Lele43g0846 780 Gene3D - 297 379 IPR012677 -
Lele43g0846 780 FunFam Heterogeneous nuclear ribonucleoprotein Q isoform A 151 296 - -
Lele43g0846 780 MobiDBLite consensus disorder prediction 473 511 - -
Lele43g0846 780 MobiDBLite consensus disorder prediction 542 659 - -
Lele43g0846 780 MobiDBLite consensus disorder prediction 558 582 - -
Lele43g0846 780 SUPERFAMILY RNA-binding domain, RBD 212 294 IPR035979 GO:0003676
Lele43g0846 780 MobiDBLite consensus disorder prediction 1 29 - -
Lele43g0846 780 MobiDBLite consensus disorder prediction 179 193 - -
Lele43g0846 780 Gene3D - 383 501 IPR012677 -
Lele43g0846 780 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 296 380 IPR000504 GO:0003723
Lele43g0846 780 CDD RRM_SF 395 460 - -
Lele43g0846 780 MobiDBLite consensus disorder prediction 81 193 - -
Lele43g0846 780 CDD RRM_SF 298 365 - -
Lele43g0846 780 SUPERFAMILY RNA-binding domain, RBD 294 460 IPR035979 GO:0003676
Lele43g0846 780 FunFam RNA recognition water-stress protein1 383 504 - -
Lele43g0846 780 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 216 294 IPR000504 GO:0003723
Lele43g0846 780 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 393 475 IPR000504 GO:0003723
Lele43g0846 780 SMART rrm1_1 217 290 IPR000504 GO:0003723
Lele43g0846 780 SMART rrm1_1 394 469 IPR000504 GO:0003723
Lele43g0846 780 SMART rrm1_1 297 376 IPR000504 GO:0003723
Lele43g0846 780 Coils Coil 92 115 - -
Lele43g0846 780 CDD RRM_SF 218 289 - -
Lele43g0846 780 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 16 703 - -
Lele43g0846 780 MobiDBLite consensus disorder prediction 94 110 - -
Lele43g0846 780 MobiDBLite consensus disorder prediction 637 651 - -
Lele43g0846 780 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 298 364 IPR000504 GO:0003723
Lele43g0846 780 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 218 286 IPR000504 GO:0003723
Lele43g0846 780 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 395 460 IPR000504 GO:0003723
Lele43g0846 780 FunFam Heterogeneous nuclear ribonucleoprotein Q 297 379 - -
Lele43g0846 780 Gene3D - 135 296 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele43g0846 Lele-ChrLele43 13186562 13191535 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele43g0846 218 460 Eukaryotic Initiation Factors Gene Family AT3G16380 25.097 1.07e-11 66.2