Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele43g0807 ATGTTCTGTTTGAGCAACGCTAATAACAGAGAGCAGAACGGTGGTGGAAATAGTAATAACAGTTCCAACTTTTCTTGGGATTTATGGGAACCGCCTTCTTCTAACAATTCGACCCTCATAAATACTTTCTACGCCGCCAACGATACAGCGGAGACCTCGGTTTCTGCCGCCACCTCTCGCCACGAGGCTGGCCTCGCAAACGCGCTAATGTTTCTTCCTCCTCCTCCTCATCAGGCTAGTGGTAGCACTGCGGCTGATTGTGACCACGACAACTGCGGCGGCGTTGACCTCGGTAGCCATCATCGTCAGCAACGACGGCGGCAACAACAGCAGGAGGAGGTACTGTATTCCGGCGATGGGGCTCACGTGCATCTAGACCCACATCTCATGTGCTTGAAGCTGGGGAAGAGGCATTATTTTGAGGACGCTAATGCTCCTCCTCTTGGCTACGCCGTAGGCGGAGGCGGAGTCGGCGGCGGGTTTGCTTCGGTTGGAAAGAGAGGGAGAGGAGGGTTCTATGGAGGAGGCAGTGTGAAGACGGCGACGACGGCAGCAACAACGACGACGGTGCCGAGGTGTCAGGTGGAGGGATGCCACGTGGCGCTGTTGAACGCGAAGGAATACCACAGGAGACACAAAGTTTGTGAGATGCATTCCAAGGCACCGAAGGTTGTCGTGTTCGGGTTGGAGCAGAGATTTTGTCAACAGTGTAGCAGGTTTCATGTGGTATCGGAGTTCGATGATTCCAAAAGGAGTTGCCGTAGGAGATTGGCGGGCCACAATGAACGAAGAAGAAAGAGCTTTAACGATTCTGTCACTAGGAGTTCCTCTTCTCAAGAAAATAAGTTACTGGTTGGAGGGATTCCGTACTTATCATCACCCCCGCCGATATCATCCGGTGGCGGGTGTGCTCTCTCTCTTCTGTCATCGTCTAAGAGTGACCATCCTTGGCTTTCTCCGGCCGATCTCTCAGCAAGATGCAGCGCCGCCCTACGTGAACTCATAGCGGAGAACCGGGCAGCCTCCATGGCTAAACAAATCATTTTGGAAAGAGATTGGAACCCACACCACCACCACCACCACCAAGAATATGATGACGACGGCGACGACGGTAATAAGGAGATCAAACTTCAATCCAATTACAATTTCTCTCAACACCACCAAATGTTTCCCTAG 1176 0.5238 MFCLSNANNREQNGGGNSNNSSNFSWDLWEPPSSNNSTLINTFYAANDTAETSVSAATSRHEAGLANALMFLPPPPHQASGSTAADCDHDNCGGVDLGSHHRQQRRRQQQQEEVLYSGDGAHVHLDPHLMCLKLGKRHYFEDANAPPLGYAVGGGGVGGGFASVGKRGRGGFYGGGSVKTATTAATTTTVPRCQVEGCHVALLNAKEYHRRHKVCEMHSKAPKVVVFGLEQRFCQQCSRFHVVSEFDDSKRSCRRRLAGHNERRRKSFNDSVTRSSSSQENKLLVGGIPYLSSPPPISSGGGCALSLLSSSKSDHPWLSPADLSARCSAALRELIAENRAASMAKQIILERDWNPHHHHHHQEYDDDGDDGNKEIKLQSNYNFSQHHQMFP 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele43g0807 391 Pfam SBP domain 193 266 IPR004333 GO:0003677
Lele43g0807 391 MobiDBLite consensus disorder prediction 75 113 - -
Lele43g0807 391 MobiDBLite consensus disorder prediction 355 374 - -
Lele43g0807 391 MobiDBLite consensus disorder prediction 1 29 - -
Lele43g0807 391 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 76 317 IPR044817 GO:0003677
Lele43g0807 391 ProSiteProfiles Zinc finger SBP-type profile. 190 267 IPR004333 GO:0003677
Lele43g0807 391 MobiDBLite consensus disorder prediction 93 109 - -
Lele43g0807 391 Gene3D - 184 254 IPR036893 GO:0003677|GO:0005634
Lele43g0807 391 SUPERFAMILY SBT domain 191 271 IPR036893 GO:0003677|GO:0005634
Lele43g0807 391 MobiDBLite consensus disorder prediction 257 280 - -
Lele43g0807 391 FunFam Squamosa promoter-binding-like protein 14 184 254 - -
Lele43g0807 391 MobiDBLite consensus disorder prediction 355 375 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele43g0807 Lele-ChrLele43 8515547 8517746 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele43g0807 130 266 SBP-box Gene Family AT1G27370 48.276 1.54e-35 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Lele43g0807 SBP 2.6e-31 No_clan