Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele43g0793 ATGCAAGTGAACAAGAAGGATCAAGGGCCTCTAAGGAAAGGGCCATGGAAACCTGAGGAAGACGAAGTCCTACTAAGCCATGTCAACAAGTATGGTCCCAGAGACTGGAGCTCCATTCGATCCAAGGGCCTTCTTCAACGCACCGGAAAGTCTTGTCGTCTTCGTTGGGTCAATAAGCTTCGTCCAAACCTCAAGAATGGGTGCAAATTTTCGCTGGAAGAGGAGAGGGTGGTGATTGAGTTGCAGGCACAATTTGGGAACAAATGGGCCAAAATTGCGTCTTTTTTGTCAGGAAGAACAGATAATGATGTCAAGAATTTCTGGAGTAGTAGGCAAAAGAGACTAGCTAGGATTCTTCATTCTACACCGTCATCATCCAAAACCCACAAGAACAAAAATGAAGTCCCCAGTTTCCACGAGGTTCCTAAGTTTAGTTCTTCATGTGATGAAGAATCTTCATCAAAGGCTCATCAGCCACTCTCATCATTCTTCACTGAGAATAATTCAGAGGTAAAAAAGATGGTTCCATTGCCAGATCTCATGAACTCCAACAACCCCTGGAGTTCTTGCGCAGTCGCTTCGATCAAACAAGAGTTTGCGACACCATTTGAGAGCTACATGAACACTATTGACATAAGCTCAGGAATTGGTTTCCCTCAGATTTTCCCATTCTCAATGGAAAGTACTCAAGATCTCTTCTTGGTCAGAGCTAATAATGACTCTGCTGGTTTTATTGATGGATTAGGATTAGGATTAGGAGGAGACCATTTGGTCGATGATGATGCATCAGAACTTGGAATAGGAACAGAGATTCCATTTCTAGGTTTTCCTTTCTATGATCCATCAGGAAGTTGCAGAATTGGGACAAGGGAACCAAATGGTAACAACCCCACAAACCCTGAAAGCTTATTCTTTGATGATTTTCCAGATGATATGTTTGATGATCAACTTCAGCCACCTCCAAGCCCATCATCATCAGAGCTGTGA 987 0.4316 MQVNKKDQGPLRKGPWKPEEDEVLLSHVNKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPNLKNGCKFSLEEERVVIELQAQFGNKWAKIASFLSGRTDNDVKNFWSSRQKRLARILHSTPSSSKTHKNKNEVPSFHEVPKFSSSCDEESSSKAHQPLSSFFTENNSEVKKMVPLPDLMNSNNPWSSCAVASIKQEFATPFESYMNTIDISSGIGFPQIFPFSMESTQDLFLVRANNDSAGFIDGLGLGLGGDHLVDDDASELGIGTEIPFLGFPFYDPSGSCRIGTREPNGNNPTNPESLFFDDFPDDMFDDQLQPPPSPSSSEL 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele43g0793 328 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Lele43g0793 328 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Lele43g0793 328 MobiDBLite consensus disorder prediction 285 328 - -
Lele43g0793 328 CDD SANT 15 60 IPR001005 -
Lele43g0793 328 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 116 IPR017930 -
Lele43g0793 328 FunFam Transcription factor GAMYB 68 137 - -
Lele43g0793 328 Pfam Myb-like DNA-binding domain 16 75 - -
Lele43g0793 328 CDD SANT 69 108 IPR001005 -
Lele43g0793 328 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 64 IPR017930 -
Lele43g0793 328 ProSiteProfiles Myb-like domain profile. 69 112 IPR001005 -
Lele43g0793 328 SMART sant 12 62 IPR001005 -
Lele43g0793 328 SMART sant 66 114 IPR001005 -
Lele43g0793 328 MobiDBLite consensus disorder prediction 288 302 - -
Lele43g0793 328 Gene3D - 13 65 - -
Lele43g0793 328 FunFam MYB transcription factor 13 65 - -
Lele43g0793 328 PANTHER TRANSCRIPTION FACTOR DUO1 5 325 - -
Lele43g0793 328 Gene3D - 69 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele43g0793 Lele-ChrLele43 7856804 7858479 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele43g0793 11 323 MYB Transcription Factor Family AT3G60460 44.848 2.34e-71 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lele43g0793 Myb_DNA-bind_6 2.4e-12 CL0123