Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele43g0785 ATGAGTCGCAGGGTGAGGAGGAAGGTTGCAAGGAAAGGAAAAGAGAAGGTGGTCTTGCCAAGTTACCCTGAAATTCAAGATGAGGTTTCTGATTCAGACCCTGAACGGGTTGTTGATTGGAGGGGCTTGCCTGATGACACAGTAATTCAACTGTTTTCATGTCTTAGTTATCGTGACCGAGCAAGCTTATCATCAACTTGTAGGACATGGAGGCTTCTTGGTAGCTCTCCATGTTTATGGACTTCTCTTGATCTTCGCTCTCACAGGTTTGATGGCACCATGGCATCTTCACTTGCTCCAAGGTGTGTGCATCTTCAGAAGCTTAGATTTCGTGGGGCTGAATCTGCTGATGCGATCATTCATCTTCAAGCTAGGAATTTGCGTGAAATAAGTGGTGACTACTGCAGGAAGATTACTGATGCGACCCTTGCAGTAATCGTGGCCCGGCATGAGTTACTTGAGAGCCTTCAGCTTGGTCCAGATTTCTGTGAAAGAATCAGCAGTGATGCTATAAAAGCAATTGCTCATTGCTGTCCTAGGTTAAGGAAACTTAGACTCTCAGGTATTAGGGATGTAAATGCTGATGCCATTACTGCAATGGCTAAGCATTGTCCGAATTTGACTGATATTGGACTCATTGACTGTTTGAATGTTGATGAGCTAGCATTGGGAAATGTGTTATCAGTTCGTTTTCTTTCTGTCGCGGGGACATCAAGTATGAATTGGGGTGTAGTTTCTCATCTTTGGCATAAGCTGCCCAACCTTACTGGAATAGATGTTTCAAGAACTGATATTGGTCCATCTACTGTTTCGAGATTGTTGTCAGCACAAAGATTGAAAGTTTTGTGTGCGCTGAATTGTCCTATACTTGAAGAAGACACCAGCCTCTCCACAAGTAAATACAAAAATAAGCTATTAATTGCCCTTTTTAATGATACTTTTCAAGGACTGGCTTCTTTATTTTTTGATGATACAAAGAATGGCAAGAATGTGTTTTTGGACTGGAGGAGCGTTAAGAACCATAATAAGGACTTAAATGAACTTATGATCTGGCTTGAGTGGATCCTATCCCATACACTTCTGCGATCTGCTGAGAGCTCTCCTCAACAGGGCCTGGACAATTTCTGGGTTGAACAAGGTGGAGCACTCTTGCTTAGTCTAATGCAGAGTCCACAAGAGGATGTTCAGGAAAGGGCAGCCACAGGTCTTGCAACGTTTGTTGTAATTGATGATGAAAATGCTAGCATTGACTGTGGAAGGGCTGAAGCAGTTATGCGGGATGGTGGCATACGGCTACTTCTTGCCTTGGCAAAATCATGGAGGGAAGGGCTTCAGTCTGAGGCAGCTAAGGCCATTGCAAATTTGTCTGTCAATTCCAATGTAGCAAAAGCTGTTGCAGAAGAAGGGGGAATTGATATTCTTGCTGGTTTGGCGAGATCCATGAACAAGCTCGTGGCTGAAGAGGCCGCTGGAGGATTGTGGAATCTCTCTGTTGGAGAAGAGCACAAGGGTGCAATTGCTGCGGCTGGTGGAATACAAGCTTTAGTGGATCTTATATTGAAGTGGTCCTCCAGTGGGGATGGAGTTTTGGAACGTGCAGCTGGTGCATTAGCTAATTTGGCAGCTGATGACAAGTGTAGTACAGAAGTTGCACTGGCTGGTGGTGTACATGCTTTAGTGATGCTTGCGCGAAGCTGCAAATTTGAGGGAGTGCAAGAGCAGGCTGCTCGTGCATTGGCTAATTTGGCTGCTCATGGAGATAGCAACAGTAACAATGCTGCTGTTGGACAAGAAGCAGGGGCTCTGGAGGCACTTGTTCAACTTACACGCTCTCCTCACGAGGGTGTTAGGCAAGAAGCCGCTGGTGCGCTTTGGAATTTGTCATTTGATGACAGGAATCGGGAAGCCATTGCAGCAGCTGGTGGAGTTCAGGCCTTGGTTGTTCTTGCACAATCTTGTTCTAACGCCTCCCCTGGACTTCAAGAGAGAGCTGCTGGTGCTCTCTGGGGATTGTCAGTTTCTGAAGCAAATAGCATTGCTATTGGACGAGAAGGAGGTGTCGCACCGTTGATTGCACTGGCACGGTCTGAAGCTGAGGATGTTCATGAGACTGCTGCAGGAGCACTATGGAATCTTGCTTTTAACCCTGGTAATGCTCTACGTATTGTCGAGGAAGGAGGAGTCTCTGCGCTTGTTGATCTCTGTTCTTCATCATTATCAAAGATGGCACGTTTCATGGCTGCATTGGCATTGGCTTACATGTTTGATGGGAGAATGGATGAATTTGCTTTGGTAGGAACCTCATCAGAAAGCATGTCCAAGAGTGTGAGCTTGGATGGAGCTAGAAGGATGGCTTTGAAACACATTGAAGCTTTCATCCTTATGTTTTCTGATCCACAAGCATTTGCTGCTGCTGCTACATCATCAGCACCTGCAGCATTGGCTCAAGTTTCTGAAGGCGCACGGATCCAAGAAGCAGGACATCTTAGATGCAGTGGTTCTGAAATTGGAAGATTTGTTGCTATGCTACGAAATCCATCATCTATACTAAAAGCTTGTGCTGCATTTGCTCTTCTCCAGTTTACAATTCCCGGTGGACGACACGCCATGCATCATGCTAGCCTCATGCAGAATACATGTGCAGCAAGAGTTCTTCGTGGGGCAGCCGCCTCAGCAACCGGCCCACTTGAAGCAAAAATATTTTCCAGAATTGTTCTCCGTAACCTCGAGTATCACCAGACAGATCTGCAAGCCATCTAG 2760 0.4591 MSRRVRRKVARKGKEKVVLPSYPEIQDEVSDSDPERVVDWRGLPDDTVIQLFSCLSYRDRASLSSTCRTWRLLGSSPCLWTSLDLRSHRFDGTMASSLAPRCVHLQKLRFRGAESADAIIHLQARNLREISGDYCRKITDATLAVIVARHELLESLQLGPDFCERISSDAIKAIAHCCPRLRKLRLSGIRDVNADAITAMAKHCPNLTDIGLIDCLNVDELALGNVLSVRFLSVAGTSSMNWGVVSHLWHKLPNLTGIDVSRTDIGPSTVSRLLSAQRLKVLCALNCPILEEDTSLSTSKYKNKLLIALFNDTFQGLASLFFDDTKNGKNVFLDWRSVKNHNKDLNELMIWLEWILSHTLLRSAESSPQQGLDNFWVEQGGALLLSLMQSPQEDVQERAATGLATFVVIDDENASIDCGRAEAVMRDGGIRLLLALAKSWREGLQSEAAKAIANLSVNSNVAKAVAEEGGIDILAGLARSMNKLVAEEAAGGLWNLSVGEEHKGAIAAAGGIQALVDLILKWSSSGDGVLERAAGALANLAADDKCSTEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNAAVGQEAGALEALVQLTRSPHEGVRQEAAGALWNLSFDDRNREAIAAAGGVQALVVLAQSCSNASPGLQERAAGALWGLSVSEANSIAIGREGGVAPLIALARSEAEDVHETAAGALWNLAFNPGNALRIVEEGGVSALVDLCSSSLSKMARFMAALALAYMFDGRMDEFALVGTSSESMSKSVSLDGARRMALKHIEAFILMFSDPQAFAAAATSSAPAALAQVSEGARIQEAGHLRCSGSEIGRFVAMLRNPSSILKACAAFALLQFTIPGGRHAMHHASLMQNTCAARVLRGAAASATGPLEAKIFSRIVLRNLEYHQTDLQAI 919
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele43g0785 919 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 641 686 IPR000225 GO:0005515
Lele43g0785 919 SUPERFAMILY ARM repeat 381 744 IPR016024 -
Lele43g0785 919 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 685 727 IPR000225 GO:0005515
Lele43g0785 919 SMART fbox_2 43 83 IPR001810 GO:0005515
Lele43g0785 919 Gene3D - 382 520 IPR011989 -
Lele43g0785 919 SUPERFAMILY RNI-like 38 293 - -
Lele43g0785 919 FunFam Protein ARABIDILLO 2 354 502 - -
Lele43g0785 919 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 428 470 IPR000225 GO:0005515
Lele43g0785 919 SMART LRR_CC_2 178 203 IPR006553 -
Lele43g0785 919 SMART LRR_CC_2 124 149 IPR006553 -
Lele43g0785 919 SMART LRR_CC_2 204 229 IPR006553 -
Lele43g0785 919 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 469 511 IPR000225 GO:0005515
Lele43g0785 919 Pfam Armadillo/beta-catenin-like repeat 500 542 IPR000225 GO:0005515
Lele43g0785 919 Pfam Armadillo/beta-catenin-like repeat 553 584 IPR000225 GO:0005515
Lele43g0785 919 Pfam Armadillo/beta-catenin-like repeat 461 497 IPR000225 GO:0005515
Lele43g0785 919 Pfam Armadillo/beta-catenin-like repeat 592 628 IPR000225 GO:0005515
Lele43g0785 919 Pfam Armadillo/beta-catenin-like repeat 676 713 IPR000225 GO:0005515
Lele43g0785 919 Pfam Armadillo/beta-catenin-like repeat 630 672 IPR000225 GO:0005515
Lele43g0785 919 Pfam Armadillo/beta-catenin-like repeat 422 456 IPR000225 GO:0005515
Lele43g0785 919 PANTHER PROTEIN ARABIDILLO 1 1 916 - -
Lele43g0785 919 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 510 555 IPR000225 GO:0005515
Lele43g0785 919 ProSiteProfiles F-box domain profile. 37 83 IPR001810 GO:0005515
Lele43g0785 919 SMART arm_5 543 584 IPR000225 GO:0005515
Lele43g0785 919 SMART arm_5 589 629 IPR000225 GO:0005515
Lele43g0785 919 SMART arm_5 499 542 IPR000225 GO:0005515
Lele43g0785 919 SMART arm_5 417 457 IPR000225 GO:0005515
Lele43g0785 919 SMART arm_5 674 714 IPR000225 GO:0005515
Lele43g0785 919 SMART arm_5 715 756 IPR000225 GO:0005515
Lele43g0785 919 SMART arm_5 630 673 IPR000225 GO:0005515
Lele43g0785 919 SMART arm_5 458 498 IPR000225 GO:0005515
Lele43g0785 919 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 554 585 IPR000225 GO:0005515
Lele43g0785 919 Pfam F-box-like 41 86 IPR001810 GO:0005515
Lele43g0785 919 Gene3D - 679 774 IPR011989 -
Lele43g0785 919 Gene3D - 590 678 IPR011989 -
Lele43g0785 919 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 600 642 IPR000225 GO:0005515
Lele43g0785 919 Gene3D - 521 589 IPR011989 -
Lele43g0785 919 Gene3D Ribonuclease Inhibitor 33 320 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele43g0785 Lele-ChrLele43 7693072 7705446 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele43g0785 556 758 U-box Gene Family AT2G23140 35.294 6.67e-20 93.2