Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele43g0780 ATGTCGGCTTCATCATCATCCACTAATTCTTCCTTTTCACCGGACCACCACCTCTCTCCCTCCGACCAGCTCTGCTATGTCCATTGCCATTTCTGCGACACTGTTCTGGCGGTGAGTGTTCCTTGCACCAGCTTGTTCAAGACCGTCACGGTGAGATGCGGCCATTGCACCAACCTTCTGTCTGTGAATATGCGTGGCCCTCTTCTTCCTCCTGCCAATCATCATCAACTTCACCTCGGACACAACTTCTTCCCTCCTCAGAATCTCCTGGAGGAGATTCGAAATGCACCATCTTCAAATATGCAGATGATGAGCCATCATCAACATCATCATCATCAGCTACCATACCCAAATAATGACTCAGTTATGAGCACCATGCGAGGAGGAGGAGGACTTGAAGAAATCCCTAAACCTCCACCACCACCAGCTAACAGACCTCCAGAAAAGAGACAGAGAGTTCCATCTGCTTACAACCGCTTCATCAAGGACGAGATCCAACGCATCAAAGCTGGGAATCCTGATATAAGCCACAGAGAGGCTTTTAGTGCAGCTGCCAAGAATTGGGCCCATTTCCCTCACATACAGTTCGGACTTATGCCTGATCATCAACCCGTGAAGAAAGCTAACGTGCGCCAGGAAGGAGAAGACGTGCTTATGAAAGAAGGGTTTTTGGGTCCCACAAACGTAGAGGATGGTTTGTGA 702 0.49 MSASSSSTNSSFSPDHHLSPSDQLCYVHCHFCDTVLAVSVPCTSLFKTVTVRCGHCTNLLSVNMRGPLLPPANHHQLHLGHNFFPPQNLLEEIRNAPSSNMQMMSHHQHHHHQLPYPNNDSVMSTMRGGGGLEEIPKPPPPPANRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIQFGLMPDHQPVKKANVRQEGEDVLMKEGFLGPTNVEDGL 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele43g0780 233 PANTHER PROTEIN YABBY 6-RELATED 7 210 IPR006780 GO:0007275
Lele43g0780 233 Gene3D High mobility group box domain 139 195 IPR036910 -
Lele43g0780 233 SUPERFAMILY HMG-box 139 192 IPR036910 -
Lele43g0780 233 MobiDBLite consensus disorder prediction 134 148 - -
Lele43g0780 233 FunFam Axial regulator YABBY 143 215 - -
Lele43g0780 233 Pfam YABBY protein 20 198 IPR006780 GO:0007275
Lele43g0780 233 MobiDBLite consensus disorder prediction 126 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele43g0780 Lele-ChrLele43 7570846 7575405 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele43g0780 31 225 C2C2-YABBY Transcription Factor Family AT4G00180 64.904 8.75e-68 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Lele43g0780 YABBY 9.4e-72 CL0114