Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lele43g0756 | ATGGAGAAGCGCGAGTGCAAGCTCTGCTTCAAAACCTTCGCTAATGGCAGAGCTCTGGGGGGTCACATGAGGTCTCACATGATGAAGAAGAAGCTTCCACTGCCTTCAAAACCAGAGGAATCTCGATCGCCTTCTCCGACCATACTGAGTTTCGAGGCCGACGACTCGCCTTGTTCTTCTTCATCTGAAGAAGATGAAGAAGGAGACAACGGTCTGAGCTACATCTTAAGAGAGAATCCTAAGAGAAGCATCCGCATCGTAGATCCTGAGTTTTCGTTTGTTGTGGATACTAATGGCTCCGTAATTCAAGATAGAGAAAGCGAGACGGAGACCGAGTCATCGAAGAAGCCAACTCGGAAACGATCCAAACGCGCTTGGAAACTCGGTAGTTTCTATGACGATGACGACGACGACGACGACGACGATCACTTCTGTAACAAGAAAATTCAGCATCAAGAAACGGGTGAAAAGCTCAAATCGAACGAACTCTGTAAGACCGAGTCGTGGATTGCGGAGCCTGAACCGGCGAGTTCGATCTCGGATACGATCACCGAAGAAGACGTCGCGTACTGCCTTATGATGCTTTCCAGAGACAAATGGAAAAGACAAAGCGATCTGAAAGACCGATACGCCGTCGTGGAGGAAGACCAGGACAAGGACGAAGAAGAAGACGAAGAAGAAGAACAAGACGATGGAGATGAATCCGAGGGGGCTTTCAAAGAGTCATTGAAATCCAGAACTCGCGGTAAGTACACGTGTGAGACGTGCAAGAAAGTGTTTCGATCTTATCAAGCATTCGGTGGTCACAGAGCGAGTCACAAGAAAATCAAATTGGAGCTCGAGAATCATAATAATGGAGGAGGAAGCACTTCGTCTTCGTCAATGTTCGCTAAGAAAATTCACGAATGCCCAATCTGTTTCAGGGTGTTCTCTTCAGGTCAAGCTCTTGGGGGACACAAGAGGTCCCATCTTACCGGTTCATCGACATTTCCGATCACTCAAGCTTCCCCTAAACCGGTCGAAAATTTCATAGATCTTAACCTTCCACCAGCTCCGACGGATGAAGACGAAATCAGCCAAATCGACAATTCTGGAATTTCAGATGCAGAATTCGTCGTTGATCATCGCATCATCAGACAGTGA | 1143 | 0.4742 | MEKRECKLCFKTFANGRALGGHMRSHMMKKKLPLPSKPEESRSPSPTILSFEADDSPCSSSSEEDEEGDNGLSYILRENPKRSIRIVDPEFSFVVDTNGSVIQDRESETETESSKKPTRKRSKRAWKLGSFYDDDDDDDDDDHFCNKKIQHQETGEKLKSNELCKTESWIAEPEPASSISDTITEEDVAYCLMMLSRDKWKRQSDLKDRYAVVEEDQDKDEEEDEEEEQDDGDESEGAFKESLKSRTRGKYTCETCKKVFRSYQAFGGHRASHKKIKLELENHNNGGGSTSSSSMFAKKIHECPICFRVFSSGQALGGHKRSHLTGSSTFPITQASPKPVENFIDLNLPPAPTDEDEISQIDNSGISDAEFVVDHRIIRQ | 380 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lele43g0756 | 380 | MobiDBLite | consensus disorder prediction | 215 | 235 | - | - | |
| Lele43g0756 | 380 | SUPERFAMILY | beta-beta-alpha zinc fingers | 251 | 323 | IPR036236 | - | |
| Lele43g0756 | 380 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 253 | 273 | IPR013087 | - | |
| Lele43g0756 | 380 | SMART | c2h2final6 | 301 | 323 | IPR013087 | - | |
| Lele43g0756 | 380 | SMART | c2h2final6 | 4 | 26 | IPR013087 | - | |
| Lele43g0756 | 380 | SMART | c2h2final6 | 251 | 273 | IPR013087 | - | |
| Lele43g0756 | 380 | Gene3D | Classic Zinc Finger | 248 | 323 | - | - | |
| Lele43g0756 | 380 | Pfam | C2H2-type zinc finger | 5 | 27 | - | - | |
| Lele43g0756 | 380 | Pfam | C2H2-type zinc finger | 301 | 324 | - | - | |
| Lele43g0756 | 380 | Pfam | C2H2-type zinc finger | 251 | 275 | - | - | |
| Lele43g0756 | 380 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 4 | 31 | IPR013087 | - | |
| Lele43g0756 | 380 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 301 | 323 | IPR013087 | - | |
| Lele43g0756 | 380 | MobiDBLite | consensus disorder prediction | 41 | 57 | - | - | |
| Lele43g0756 | 380 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 6 | 26 | IPR013087 | - | |
| Lele43g0756 | 380 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 303 | 323 | IPR013087 | - | |
| Lele43g0756 | 380 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 251 | 278 | IPR013087 | - | |
| Lele43g0756 | 380 | PANTHER | ZINC FINGER PROTEIN ZAT1-RELATED | 1 | 374 | IPR044303 | GO:0006355 | |
| Lele43g0756 | 380 | MobiDBLite | consensus disorder prediction | 30 | 73 | - | - | |
| Lele43g0756 | 380 | MobiDBLite | consensus disorder prediction | 211 | 243 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lele43g0756 | Lele-ChrLele43 | 6964946 | 6966088 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lele43g0756 | 1 | 361 | C2H2 Transcription Factor Family | AT3G60580 | 38.710 | 8.52e-64 | 204 |
Transcription factors information