LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele43g0755	ATGGACGATGACGATGACGCGGCCAGCGACTGGGACGGTGGTAGGGATGTTAATGTTCCTCCGTCCAGTAAAAAAATGTACTCGTTGAGGACGAATCCTAATCGTTTAAAGAATAGGGTTTGTGAGAATTGTGGTAAAGAGTTGTTGTCTTGGAAGTCCTTCCTTGAACATGGTATTGGTAAGTGCGTTTCCGATGATGCTGACGAGTCGTTTGTCTCGTCGGACGGCAACGATATGTCGGATGGTGGTGGTGGTGATGGTCGGAGAGGTTGTGGTAATTCGTTTAAGAGGAAGAGGTCTTCTGGAACCAATAAAGCGGGAAGCTTCAATAATAATGATAATAATAACAACCCTAATTGCTCATCATCCAATGAAGAGGAAGACCTCGGCGCCGCTAACTGTTTGATGATGCTGTCGAACGCCACCTTGGAGGCCGGTGAATCGTCTGCGTTGGCGATGAGCAAAGACGAAGAGAGAATAAGAGACCCTAATTTGAGCTTCATGGTTCCAAAGTCACAACATGTCCCTTCAGATCATCATCATAACAAAGCCAAAGAGGTAGGCAACAACACCACCACCACCAATAATAACAAGGGTTTGTTTGAATGCAAAGCATGCAAGAAAGTTTTCAATTCGCATCAAGCATTGGGTGGTCACAGAGCCAGCCACAAGAAAGTCAAAGGTTGCTTCGCTTCTCGTCTCGACAACCTCGACGACACCGGCGCCGATGATGACGTCATCACCCACGAAGATCAACTCTTCCCAACGAACAACAAATCCAACACCCTTCACTTTGATCATCATGGATCTAACAAAAACAATAATAATACCTCATCTTCCTCTAACAGGAAATCGAAAGTCCACGAATGCTCGATATGTCACCGGGTTTTCTCGTCGGGACAAGCTCTCGGAGGACACAAGAGGTGTCATTGGATTACATCGAACGCACCAGACACTACGGCGTTGGCTAGGTTTCAGCAATTTCAAGAACAAATAGAACAACACATGAAAAGTAACGAAGTTGTTGTACCTAAAAAGTTCGATGTCGTCGACTCTGACCCAATCGATCTTAAGCTCGATCTCAACCTCCCAGCTCCATCGCCGGATTCCAGCCACCGCCGCAACGTCTCGACGGAAATCTACTTACCGTCATGGGTAGGTGGTCGAGTAGTGAAGGAATTACATAAAGATGACAACACTAGTCAAAGCCATCAAATGGACAAGAACAACAATGGCGAAGAATGCAAGAACAACAGCAACAAAAACCTTAACATTAGCAATGGTTCGACGATACAAAACGGCGTCGTCGTGGAAGACGACGAAGCTGACAGTAAGGTGAAGTTAGCAAAACTCAGTGAACTAAAGGACATGACAGAAGAAGGGAGTTCTTCAGCATGGTTACAGGTGGGAATCGGTTCTTCGACCACAACTGATGACGTGGGAACTGACCCATAA	1455	0.4605	MDDDDDAASDWDGGRDVNVPPSSKKMYSLRTNPNRLKNRVCENCGKELLSWKSFLEHGIGKCVSDDADESFVSSDGNDMSDGGGGDGRRGCGNSFKRKRSSGTNKAGSFNNNDNNNNPNCSSSNEEEDLGAANCLMMLSNATLEAGESSALAMSKDEERIRDPNLSFMVPKSQHVPSDHHHNKAKEVGNNTTTTNNNKGLFECKACKKVFNSHQALGGHRASHKKVKGCFASRLDNLDDTGADDDVITHEDQLFPTNNKSNTLHFDHHGSNKNNNNTSSSSNRKSKVHECSICHRVFSSGQALGGHKRCHWITSNAPDTTALARFQQFQEQIEQHMKSNEVVVPKKFDVVDSDPIDLKLDLNLPAPSPDSSHRRNVSTEIYLPSWVGGRVVKELHKDDNTSQSHQMDKNNNGEECKNNSNKNLNISNGSTIQNGVVVEDDEADSKVKLAKLSELKDMTEEGSSSAWLQVGIGSSTTTDDVGTDP	484

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele43g0755	484	ProSitePatterns	Zinc finger C2H2 type domain signature.	290	310	IPR013087	-
	Lele43g0755	484	SMART	c2h2final6	288	310	IPR013087	-
	Lele43g0755	484	SMART	c2h2final6	201	223	IPR013087	-
	Lele43g0755	484	MobiDBLite	consensus disorder prediction	252	283	-	-
	Lele43g0755	484	MobiDBLite	consensus disorder prediction	172	193	-	-
	Lele43g0755	484	PANTHER	OS02G0659100 PROTEIN	3	477	-	-
	Lele43g0755	484	MobiDBLite	consensus disorder prediction	458	484	-	-
	Lele43g0755	484	ProSiteProfiles	Zinc finger C2H2 type domain profile.	201	228	IPR013087	-
	Lele43g0755	484	Pfam	C2H2-type zinc finger	287	312	-	-
	Lele43g0755	484	Pfam	C2H2-type zinc finger	201	225	-	-
	Lele43g0755	484	MobiDBLite	consensus disorder prediction	404	428	-	-
	Lele43g0755	484	ProSitePatterns	Zinc finger C2H2 type domain signature.	203	223	IPR013087	-
	Lele43g0755	484	ProSiteProfiles	Zinc finger C2H2 type domain profile.	288	310	IPR013087	-
	Lele43g0755	484	MobiDBLite	consensus disorder prediction	96	125	-	-
	Lele43g0755	484	SUPERFAMILY	beta-beta-alpha zinc fingers	200	310	IPR036236	-
	Lele43g0755	484	MobiDBLite	consensus disorder prediction	397	428	-	-
	Lele43g0755	484	MobiDBLite	consensus disorder prediction	457	484	-	-
	Lele43g0755	484	MobiDBLite	consensus disorder prediction	73	125	-	-
	Lele43g0755	484	MobiDBLite	consensus disorder prediction	1	31	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele43g0755	Lele-ChrLele43	6932682	6934136	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele43g0755	122	322	C2H2 Transcription Factor Family	AT1G02040	40.594	3.23e-31	121

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	C2H2	Lele43g0755		zf-C2H2_6	1.2e-12	CL0361