Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele43g0724 ATGGAAGGCGTGCCTGCCGCGCCCTCAATTTCCAATGAACGAATCGCTTACAAGCTCAAAGGCTACTTCGATTTGGCCAAGGAAGAGATTGACAAGGCTGTTAGGGCCGAAGAGTGGGGCTTGGTCGATGATGCTGTTCTTCATTATAACAACGCCCAGCGGATTTTGATCGAAGCCAGTTCTAATGCTGTCCCTTCCTATATTACTTCCAGTGAACAAGAGAAGGTGAAATCTTATCGTGAAAAAATATCGAAATGGCACGGTCAAGTTTCTGAAAGGTTACAGATTCTAAGTAGACGAGCAGGCAGCAAGTCCACTATTCAGAAAACTGTTACTCAGGGACAAACTGCAGCAGTTTCACTTAAGCCGTCAAATGCTAGAAAAGGTGTGTTGCAAAAGAATCATCAAAGAACAAACCATGCGGATAACGATGCAAGCCCAAAATCTAGTCAGATATCTGGTGGAAATTTCGATGCAAAATTAGTTGAAACAATTAACACTGCCATAGTAGATAGAAGCCCTTCTGTTAGATGGGAAGATATTGCGGGTCTTGAGAAGGCAAAGCAAGCATTAATGGAAATGGTTATTTTGCCAACTAAAAGAAGAGACCTCTTCACTGGTCTTCGAAGGCCAGCTAGAGGTTTGCTTCTCTTTGGTCCCCCGGGAAATGGAAAAACCATGCTTGCCAAAGCAGTAGCTTCAGAATCAGCAGGAACATTTTTTAATGTATCCGCAGCTTCCTTGACATCAAAATGGGTTGGTGAAGGTGAAAAGCTTGTCCGGACTCTTTTCATGGTAGCTATATCCAGGCAACCATCAGTAATTTTCATTGATGAGATTGACAGTATTATGTCAACAAGGTTGGCTAATGAGAATGATGCAAGCAGACGGTTAAAATCTGAATTTCTTATCCAGTTTGATGGAGTGACCTCCAATCCTGATGACATTGTAATTGTTATTGGAGCTACTAATAAGCCACAAGAATTGGACGATGCAGTTCTTCGGAGACTGGTGAAGAGAATTTACGTACCTTTGCCAGAGGCAAATGTTCGTAGACTTCTACTAAAGCACAAACTCAAGGGTCAAGCGTTCTCATTACCTAGTGGAGATCTAGAAAGGCTTGTAAATGATACAGAAGGATATTCCGGAAGTGATCTTCAAGCCTTGTGTGAAGAAGCGGCAATGATGCCAATAAGAGAGCTGGGTTCTGACATCCTAACTGTTAAGGCAGATCAGGTAAGAGGACTGAGATATGAGGATTTTAAGAAGGCAATGAGTGTAATTAGACCCAGTTTAAACAAAAGCAAGTGGGAAGAGCTTGAGCGATGGAATGAGGAGTTTGGCTCTAACTGA 1353 0.425 MEGVPAAPSISNERIAYKLKGYFDLAKEEIDKAVRAEEWGLVDDAVLHYNNAQRILIEASSNAVPSYITSSEQEKVKSYREKISKWHGQVSERLQILSRRAGSKSTIQKTVTQGQTAAVSLKPSNARKGVLQKNHQRTNHADNDASPKSSQISGGNFDAKLVETINTAIVDRSPSVRWEDIAGLEKAKQALMEMVILPTKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESAGTFFNVSAASLTSKWVGEGEKLVRTLFMVAISRQPSVIFIDEIDSIMSTRLANENDASRRLKSEFLIQFDGVTSNPDDIVIVIGATNKPQELDDAVLRRLVKRIYVPLPEANVRRLLLKHKLKGQAFSLPSGDLERLVNDTEGYSGSDLQALCEEAAMMPIRELGSDILTVKADQVRGLRYEDFKKAMSVIRPSLNKSKWEELERWNEEFGSN 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele43g0724 450 CDD AAA 200 345 - -
Lele43g0724 450 SMART AAA_5 211 347 IPR003593 -
Lele43g0724 450 MobiDBLite consensus disorder prediction 123 153 - -
Lele43g0724 450 Pfam Vps4 C terminal oligomerisation domain 416 448 IPR015415 -
Lele43g0724 450 Gene3D - 12 101 - -
Lele43g0724 450 CDD MIT_spastin 19 97 - -
Lele43g0724 450 Pfam AAA+ lid domain 370 404 IPR041569 -
Lele43g0724 450 Gene3D - 174 444 IPR027417 -
Lele43g0724 450 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 174 447 IPR027417 -
Lele43g0724 450 Pfam ATPase family associated with various cellular activities (AAA) 215 345 IPR003959 GO:0005524|GO:0016887
Lele43g0724 450 ProSitePatterns AAA-protein family signature. 317 336 IPR003960 GO:0005524|GO:0016887
Lele43g0724 450 Gene3D - 346 428 - -
Lele43g0724 450 PANTHER AAA DOMAIN-CONTAINING 72 449 - -
Lele43g0724 450 FunFam AAA-type ATPase family protein 346 428 - -
Lele43g0724 450 FunFam Spastin, putative 174 358 - -
Lele43g0724 450 SMART smart 19 96 IPR007330 -
Lele43g0724 450 FunFam AAA-type ATPase family protein 12 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele43g0724 Lele-ChrLele43 6554481 6569024 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele43g0724 174 431 Calmodulin-binding Proteins AT3G56690 39.700 2.76e-46 170