Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele43g0700 ATGGTGTCGTTTCACCTTTCTATCTTGACCCCATCTCAATCGGTTCATACGGTGACATTTCTAGAGGTGTTTGTGTACACTTCAGTTGGGAATGATGGGCCTAGTGGAATGTCTATGATGAAGCTGACCACCATTGGAGCAGGAACTATTAATCGGGATTTTCTAGTGGAGGTGATTCTAGGCGATGGTCAGAAACTTTCCAGCGTAGGCCTCTCTCTGGCTTCGCTTCTGCGTTCTTGTGCAGATCAAGACAAAACCTTGCTGCTATTCTTCTATCAATCCCCTGCGCTGGTTCTGCTCGTTCAAGTTCTTCCTTCGCCCGGTGTTTCCTCTTTTATTATCCTTATTAAATTGATTCGACTTGATGTTAATGCTCAATGCTGGCATGTGTTTTCTGGTTCGTTCTATGCCATGGATGGTATTCATGGGAATGATTCTCGGATGCACATGGGTGCTGCACAACATCCAATGCATGTAACCTATGTGCCAGAAAATGAACATGGATTGGACCATATGAATGATGGGAATCAGATGGAAGACAATAACAATTGTGGTGATGCTAATGTCAGCAGACATGAGAGTGTAGAAGGAGAAGTTTCCAACCCTGGAAATGTTACTGATGATCATGGTGCAATAATTGAACAAGCTAGTGGTGACCAGCTCACGTTGTCTTTTCAAGGCCAGGTTTATGTATTTAACTCTGTGTCGCCGGAAAAGGTTCAAGCTGTGCTATTATTATTGGGAGGCCGTGAAGTACCTTCCATGTCTGCAAATCCAATGAATGTTCATAATAATCGGGATATGTCTGGGACTCCTGTAAAACTCGGTGTCCCTCAAAGATTAGCCTCATTGATTAGATTTCGAGAAAAGCGGAAAGAACGGAATTTTGAAAAGAAAATACGTTACACTGTTCGTAAAGAAGTGGCATTAAGGATGCAGAGAAATAAAGGTCAATTTACATCTTCCAAATCGAACCCTGATGAATCTGCTCCAGCTGCAACAAATTTGGGCACAAACGAAAACTGGACACCAGACAATATTGGATCCCAACAGCAGGATGTTGTCTGTAGGCACTGTGGCATCAGCGAGAAATGCACACCAATGATGCGACGTGGACCTGAAGGGCCAAGAACCCTGTGCAATGCATGTGGACTTATGTGGGCAAATAAGGGAACTCTAAGGGACCTGACAAAAACTCCCTTACCTGCACACAATTCTTCATTAAATAGGAATGAGTTTAGCGAAAATGCTGACATGGACATCTTGTATTTTTACCCTTCATATATTAGCAGAGTTCCTTTATTATTGCTCTGTGACAGACAGCTAAGTGGAGATTTTGATTAA 1344 0.4278 MVSFHLSILTPSQSVHTVTFLEVFVYTSVGNDGPSGMSMMKLTTIGAGTINRDFLVEVILGDGQKLSSVGLSLASLLRSCADQDKTLLLFFYQSPALVLLVQVLPSPGVSSFIILIKLIRLDVNAQCWHVFSGSFYAMDGIHGNDSRMHMGAAQHPMHVTYVPENEHGLDHMNDGNQMEDNNNCGDANVSRHESVEGEVSNPGNVTDDHGAIIEQASGDQLTLSFQGQVYVFNSVSPEKVQAVLLLLGGREVPSMSANPMNVHNNRDMSGTPVKLGVPQRLASLIRFREKRKERNFEKKIRYTVRKEVALRMQRNKGQFTSSKSNPDESAPAATNLGTNENWTPDNIGSQQQDVVCRHCGISEKCTPMMRRGPEGPRTLCNACGLMWANKGTLRDLTKTPLPAHNSSLNRNEFSENADMDILYFYPSYISRVPLLLLCDRQLSGDFD 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele43g0700 447 ProSiteProfiles Tify domain profile. 214 249 IPR010399 -
Lele43g0700 447 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 351 402 - -
Lele43g0700 447 Pfam CCT motif 280 322 IPR010402 GO:0005515
Lele43g0700 447 ProSiteProfiles CCT domain profile. 280 322 IPR010402 GO:0005515
Lele43g0700 447 SMART GATA_3 350 408 IPR000679 GO:0006355|GO:0043565
Lele43g0700 447 MobiDBLite consensus disorder prediction 315 346 - -
Lele43g0700 447 ProSitePatterns GATA-type zinc finger domain. 356 383 IPR000679 GO:0006355|GO:0043565
Lele43g0700 447 Pfam tify domain 217 248 IPR010399 -
Lele43g0700 447 Gene3D - 347 410 IPR013088 GO:0006355|GO:0008270
Lele43g0700 447 PANTHER GATA TRANSCRIPTION FACTOR 28 163 406 IPR045280 GO:0006355
Lele43g0700 447 SMART tify_2 214 249 IPR010399 -
Lele43g0700 447 Pfam GATA zinc finger 356 392 IPR000679 GO:0006355|GO:0043565
Lele43g0700 447 ProSiteProfiles GATA-type zinc finger domain profile. 350 398 IPR000679 GO:0006355|GO:0043565
Lele43g0700 447 CDD ZnF_GATA 355 398 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele43g0700 Lele-ChrLele43 6310734 6318672 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele43g0700 138 412 Tify Gene Family AT1G51600 59.507 3.60e-111 328
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Lele43g0700 CCT 2.4e-14 CL0281