Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele43g0658 ATGTGGACTAACACTGGTCCTTCTGTTTCATCGCCATCGTCGGTTGGCCATAAACTGATCTATCTTGCTGATTGCCAAAGAATTTTTACCATAGGAGAGATGGGCAATGAGGAAACTCCAGCAACTCCAGGGACTTCTGGTGCTTCACTGTTTGGTAAAAAATCAATTCTCATGAACAAGTGTCTCAGTGCTAAAGAATGGACCTTGGAAGAAGTAGGCTTAGCCAAAGTCTCTTGCTCATTGCCTCCCCCTCCTGTCCCCCTAAGAAGAAAGGTAGGAGCTGAGTTTATAGGAACTTTAATTCTCATGTTTGCTGGTATTTCCACTGCTATTGTGAACCAAAGGACGCAGGGTTCTGAGACTCTCCTTGGCTGTGCTGCCTCTACTGGTCTTGCAGCTATGGTCGTCATCCTCGCCACCGGTCACATCTCTGGTGCTCATCTCAACCCTGCAGTCACCATTTCCTTTGCTGCTTTAAAGCACTTCCCATGGAAACATGTTCCTGTGTATATTGGCGCACAATTTATGGCGTCCATAAGTGCAGCATTTGCATTGAAGGGGATATTTCACCCCTTCATGAGTGGAGGAGTCACAGTTCCTTCAGGAGGAAATGCTCAAGCTTTTGCTTTAGAGTTCATTATCAGCTTTAATCTCATGTTTGTTGTCACAGCAGTGGCCACCGACAAAAGAGCAGTGGGGGAACTAGCTGGAATTGCAGTGGGAGCGACTGTCATGCTCAACATACTTATAGCCGGGCCAGCAACAGGAGGATCAATGAACCCAGTGAGAACACTAGGTCCAGCCATTGCTACTAGTAACTACAAAGACATATGGGTCTACCTCATTGCTCCTATACTAGGAGCTCTTGGTGGGGCAGGGATCTACACTGCAGTCAAGCTTCCAAAAGCAGATGGTGAAACACAAGGAAACTCTTCAACACCCGGAAGCTTCAGAAAGTGA 960 0.4688 MWTNTGPSVSSPSSVGHKLIYLADCQRIFTIGEMGNEETPATPGTSGASLFGKKSILMNKCLSAKEWTLEEVGLAKVSCSLPPPPVPLRRKVGAEFIGTLILMFAGISTAIVNQRTQGSETLLGCAASTGLAAMVVILATGHISGAHLNPAVTISFAALKHFPWKHVPVYIGAQFMASISAAFALKGIFHPFMSGGVTVPSGGNAQAFALEFIISFNLMFVVTAVATDKRAVGELAGIAVGATVMLNILIAGPATGGSMNPVRTLGPAIATSNYKDIWVYLIAPILGALGGAGIYTAVKLPKADGETQGNSSTPGSFRK 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele43g0658 319 ProSitePatterns MIP family signature. 147 155 IPR022357 -
Lele43g0658 319 PANTHER AQUAPORIN NIP2-1 73 303 IPR034294 -
Lele43g0658 319 FunFam Aquaporin NIP2-1 78 310 - -
Lele43g0658 319 PRINTS Major intrinsic protein family signature 129 153 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele43g0658 319 PRINTS Major intrinsic protein family signature 166 185 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele43g0658 319 PRINTS Major intrinsic protein family signature 241 263 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele43g0658 319 PRINTS Major intrinsic protein family signature 278 298 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele43g0658 319 PRINTS Major intrinsic protein family signature 90 109 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele43g0658 319 PRINTS Major intrinsic protein family signature 210 228 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele43g0658 319 Pfam Major intrinsic protein 89 295 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele43g0658 319 Gene3D Glycerol uptake facilitator protein. 85 311 IPR023271 -
Lele43g0658 319 SUPERFAMILY Aquaporin-like 87 303 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele43g0658 Lele-ChrLele43 5866844 5870395 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele43g0658 34 319 Major Intrinsic Protein MIP AT1G80760 69.256 3.49e-140 397