LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele43g0652	ATGGCGGGCCTTGAAGAAATCAAGAAAGAGAATGTGGATCTTGAACGAATACCGGTGGAAGAAGTATTTCGGGAACTAAATTGTACAAAAGAGGGTCTCACAAATGAAGAAGGCCAAAAGAGATTGTCAGTATTTGGCTACAACAAGCTGGAAGAGAAGAAGGAAAGCAAGTTCCTGAAATTCTTGGGATTTATGTGGAACCCTCTATCATGGGTGATGGAAGCTGCCGCCCTCATGGCCATTGCATTGGCTAATGGCGGGACTGGTACCCTAACATTGAACAAGCTCACAGTGGACAAGGCTCTAGTTGAGGTTTTTGAGAAAGACATAGACAAGGACATGTTGATTTTGCTTGGAGCTAGGGCCTCTAGGGTGGAAAACCAGGATGCTATTGATGCTTGCATTGTTGGAATGCTGGGTGACCCAAAGGAGGCTAGAGATGGCATCCAAGAAGTGCATTTCCTTCCCTTTAATCCAGTGGACAAGCGTACAGCCATCACATACATTGACTCTGCAGGCAATTGGCATAGAGTCAGCAAAGGTGCTCCAGAGCAGATTATCTCTCTCTGCAATCTCCGGGGTGATGTGCTGAAAAGATCTCATGCCATTATTGACAAGTTCGCTGACCGTGGTCTTCGGTCTCTTGCTGTTTGTAGACAAGAAGTCCCAGAGAAGACAAAGGAAAGTGCAGGAGGACCATGGCATTTTGTTGGTCTCTTACCTCTCTTTGATCCACCAAGACATGACAGTGCAGAGACCATCAGAAAAGCTCTTGGACTCGGAGTCAATGTGAAGATGATCACCGGTGACCAACTCGCCATCGGTAAAGAAACCGGTCGCAGGCTTGGCATGGGAAGCAATATGTACCCTTCTTCCTCTCTCCTTGGTGAACACAAGGATGAGTCTGTTGCTGCTCTTCCCATTGATGAGCTTATTGAAAAGGCCGATGGCTTTGCTGGAGTCTTCCCTGAGCACAAGTATGAGATTGTGAAGAGGCTGCAAGATAGGAAGCACATCTGTGGTATGACTGGAGATGGTGTGAATGATGCACCAGCCTTGAAGAGAGCAGATATCGGAATTGCAGTTGCTGATGCAACCGATGCAGCTCGAAGCGCGTCTGACATAGTCCTAACTGAACCGGGTTTGAGTGTGATTATCAGTGCAGTGTTAACAAGCAGGGCTATTTTCCAGAGGATGAAGAACTACACCATTTATGCAGTCTCCATTACAATCCGTATTGTTCTGGGATTTATGCTCCTTGCTCTTATCTGGAAATACGATTTCTCGCCTTTCATGGTTCTGATCATCGCTATACTCAATGATGGCACCATCATGACCATTTCCAAGGACAGAGTGAAGCCATCTCCAATTCCTGATTCCTGGAAACTCAATGAGATTTTCGCTACTGGCGTCGTTCTTGGTGCCTACCTTGCTGTCATGACCGTTGTCTTCTTCTGGGCCGCTCATGCATCTGATTTCTTCACGGAACGTTTTGGAGTTAGATCTATCAGGCACAGCCCAGAAGAGCTAACAGCAGCTGTTTACCTTCAAGTGAGTATAGTGAGTCAAGCTCTCATCTTCGTCACTCGTTCAAGGAGCTGGTCTTATGTTGAACGCCCCGGTCTCTTGCTTCTCGGCGCCTTTCTCATTGCTCAGTTAATCGCGACCTTATTAGCCGTGTATGCAAACTGGGAATTCGCAAGGATTAAAGGAGTTGGTTGGGGGTGGGCTGGTGTGATTTGGCTCTACAGCATCATCTTCTACATTCCTTTAGATGTCTTAAAGTTCATCATCCGATATTCATTGAGTGGCAAGGCCTGGAACAACATTACTGAGACAAGGGTTGCTTTCACAAGTAAGAAAGACTATGGAAGAGGGGAGAGAGAAGCACAATGGGCTGCAGATCAACGTACAATCCATGGTTTGAATCCTCCTGAAGCAGAAGATATCTTGAAGGACAAAACAGATTACAGAGAACTCACTGAAATTGCAGAACAAGCAAGGAAACGTGCTGAAGTTGCAAGGTTGAGGGAGCTTCACACACTGAAGGGGCATGTGGAATCTGTGGTGAAGCTGAAGGGACTTGATATTGAGACAATTCAGCAGCACTACACTGTGTGA	2121	0.4644	MAGLEEIKKENVDLERIPVEEVFRELNCTKEGLTNEEGQKRLSVFGYNKLEEKKESKFLKFLGFMWNPLSWVMEAAALMAIALANGGTGTLTLNKLTVDKALVEVFEKDIDKDMLILLGARASRVENQDAIDACIVGMLGDPKEARDGIQEVHFLPFNPVDKRTAITYIDSAGNWHRVSKGAPEQIISLCNLRGDVLKRSHAIIDKFADRGLRSLAVCRQEVPEKTKESAGGPWHFVGLLPLFDPPRHDSAETIRKALGLGVNVKMITGDQLAIGKETGRRLGMGSNMYPSSSLLGEHKDESVAALPIDELIEKADGFAGVFPEHKYEIVKRLQDRKHICGMTGDGVNDAPALKRADIGIAVADATDAARSASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVLGFMLLALIWKYDFSPFMVLIIAILNDGTIMTISKDRVKPSPIPDSWKLNEIFATGVVLGAYLAVMTVVFFWAAHASDFFTERFGVRSIRHSPEELTAAVYLQVSIVSQALIFVTRSRSWSYVERPGLLLLGAFLIAQLIATLLAVYANWEFARIKGVGWGWAGVIWLYSIIFYIPLDVLKFIIRYSLSGKAWNNITETRVAFTSKKDYGRGEREAQWAADQRTIHGLNPPEAEDILKDKTDYRELTEIAEQARKRAEVARLRELHTLKGHVESVVKLKGLDIETIQQHYTV	706

Annotation information

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Lele43g0652	706	FunFam	Plasma membrane ATPase	237	391	-	-
Lele43g0652	706	Coils	Coil	657	677	-	-
Lele43g0652	706	Gene3D	-	96	243	IPR023299	GO:0000166
Lele43g0652	706	TIGRFAM	ATPase_P-type: HAD ATPase, P-type, family IC	318	426	IPR001757	GO:0005215\|GO:0005524\|GO:0016020\|GO:0016887
Lele43g0652	706	TIGRFAM	ATPase-IIIA_H: plasma-membrane proton-efflux P-type ATPase	88	561	IPR006534	GO:0008553\|GO:0016020\|GO:0120029
Lele43g0652	706	Gene3D	-	381	570	-	-
Lele43g0652	706	Pfam	Cation transporter/ATPase, N-terminus	17	79	IPR004014	-
Lele43g0652	706	Gene3D	-	655	706	-	-
Lele43g0652	706	SUPERFAMILY	Calcium ATPase, transmembrane domain M	12	602	IPR023298	-
Lele43g0652	706	SUPERFAMILY	HAD-like	88	390	IPR036412	-
Lele43g0652	706	Gene3D	-	83	380	IPR023214	-
Lele43g0652	706	FunFam	Plasma membrane ATPase	96	243	-	-
Lele43g0652	706	Pfam	haloacid dehalogenase-like hydrolase	173	357	-	-
Lele43g0652	706	PRINTS	H+-transporting ATPase (proton pump) signature	343	359	IPR001757	GO:0005215\|GO:0005524\|GO:0016020\|GO:0016887
Lele43g0652	706	PRINTS	H+-transporting ATPase (proton pump) signature	515	536	IPR001757	GO:0005215\|GO:0005524\|GO:0016020\|GO:0016887
Lele43g0652	706	PRINTS	H+-transporting ATPase (proton pump) signature	200	218	IPR001757	GO:0005215\|GO:0005524\|GO:0016020\|GO:0016887
Lele43g0652	706	PRINTS	H+-transporting ATPase (proton pump) signature	315	331	IPR001757	GO:0005215\|GO:0005524\|GO:0016020\|GO:0016887
Lele43g0652	706	PRINTS	H+-transporting ATPase (proton pump) signature	374	399	IPR001757	GO:0005215\|GO:0005524\|GO:0016020\|GO:0016887
Lele43g0652	706	PRINTS	P-type cation-transporting ATPase superfamily signature	260	270	-	-
Lele43g0652	706	PRINTS	P-type cation-transporting ATPase superfamily signature	84	98	-	-
Lele43g0652	706	PRINTS	P-type cation-transporting ATPase superfamily signature	343	362	-	-
Lele43g0652	706	PRINTS	P-type cation-transporting ATPase superfamily signature	366	378	-	-
Lele43g0652	706	PRINTS	P-type cation-transporting ATPase superfamily signature	238	249	-	-
Lele43g0652	706	FunFam	ATPase 4 plasma membrane-type	328	570	-	-
Lele43g0652	706	PANTHER	CALCIUM-TRANSPORTING ATPASE	15	87	-	-
Lele43g0652	706	SMART	Cation_ATPase_N_a_2	13	85	IPR004014	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele43g0652	Lele-ChrLele43	5786543	5790715	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele43g0652	5	87	Primary Pumps ATPases	AT3G42640	79.518	1.02e-36	146