Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele43g0633 ATGGCTTTGAGCCTAGGAACGACGGCAACGGACTGTGGGACGCTGCTTGACGCTTTGTTTTTTCTTATTGGAGATCATCTTCGGCTATCACGGAACTGCAATTTTGTAGTTGATATGGAAGTAGATGATGATTACGTGGAGTATGTGCCCGTGGCCAAGCGGAGGGCCATGGAGGCTCAGAAGGTTCTTGAACGAAAAGGGAAATCATCTTCCTCCACAGTCGATGATGATTGGGAGAAGTCAAGAGTGGCTGAAGCTAAACCAAGTCTTCTTGTTAAGGCTTCCCAGTTGAAACGGGATCAACCTGAAATTAGTCCGACAGAGCAGATTGTTCGACAGGAAAAGGAGATGATTGAGAACTTATCAGATCGAAAAACCCTAATGTCTGTTCGAGAATTGGCTAAGGGAATCACTTATACAGAGCCTTTGCCTACAGGATGGAAGCCGCCTTTACCCATCAGAAGAATGTCTAAAAAGCAACGTGATTTGATTCGGAAGCAGTGGCACATAATCGTCGACGGTGAAGATATCCCACCTCCAATTAAGAATTTCAAGGATATGAGGTTTCCGGAGTCAATTTTGAACAAGTTGAAAGCCAAAGGGATTGTGCAGCCAACACCTATTCAAGTGCAAGGTCTTCCTGTGATCTTATCTGGGAGGGATATGATTGGGATTGCTTTCACAGGATCAGGGAAAACTCTTGTCTTTGTATTGCCAATGATCATGCTGGCTTTGCAGGAGGAAATTATGATGCCTATTGTTCCAGGAGAAGGTCCATTCGGTTTGATTGTTTGTCCTTCGAGGGAACTCGCTAGACAAACTTACGAGGTGTTTGAACAGTTTCTGATACCTTTGAGAGAAGCTGGATATCCTGAACTTAGGCCTTTGCTTTGTATTGGTGGAGTGGATATGAGATCTCAGCTAGATGTCGTGAAGAAGGGTGTTCATATTGTTGTTGCCACCCCCGGCAGGTTGAAGGATATGTTGGCGAAGAAAAAAATGAATCTTGATAATTGCAGGTATTTAACTTTAGACGAGGCTGATAGGTTGGTAGATTTGGGATTCGAAGATGATATAAGAGAAGTGTTTGATCACTTGAAAGCTCAAAGGCAGACTCTCTTATTTTCTGCCACTATGCCGACCAAGATTCAGAATTTTGCTAGAAGTGCCCTGGTGAAACCTGTTATTGTCAACGTGGGGAGAGCGGGGGCGGCGAATCTTGATGTAATCCAGGAAGTGGAATATGTTAAGCAAGAGGCGAAAATAGTTTATCTGCTTGAGTGCCTGCAAAAAACCCCACCTCCAGTTTTAATATTCTGTGAGAACAAGGCAGATGTGGATGACATTCATGAATATCTTCTCCTGAAAGGAGTTGGAGCAGTGGCTGTTCATGGAGGCAAAGATCAGGAAGAAAGAGAGTATTCCATTGCAGCCTTTAAGTCTGGGAAGAAAGATGTGTTGGTTGCAACCGATGTCGCATCCAAGGGGTTGGACTTCCCTGATATTCAGCATGTTATTAACTATGACATGCCTGATGAGATCGAAAATTATGTTCATAGGATTGGTCGAACTGGAAGATGTGGCAGGACAGGCATAGCAACAACATTCATAAACAAGAATCAAACTGAGACCACCTTGCTTGATTTGAAACATCTGTTGCAAGAAGCGAAACAGCGCATTCCCCCTGTTTTAGGAGATTTGAATGATCCAATGGATGATAATGATGAAATCACTGGTAAAAGTGGGGTCAAGGGTTGTGCCTATTGTGGTGGGCTTGGTCACCGCATTCGTGACTGTCCCAAGCTGGAACATCAGAAAAGCATGGCCATTGCAAATAGTAGAAGGGACTATTTTGGTTCTGGTGGATATAGGGGAGAGATTTGA 1884 0.4395 MALSLGTTATDCGTLLDALFFLIGDHLRLSRNCNFVVDMEVDDDYVEYVPVAKRRAMEAQKVLERKGKSSSSTVDDDWEKSRVAEAKPSLLVKASQLKRDQPEISPTEQIVRQEKEMIENLSDRKTLMSVRELAKGITYTEPLPTGWKPPLPIRRMSKKQRDLIRKQWHIIVDGEDIPPPIKNFKDMRFPESILNKLKAKGIVQPTPIQVQGLPVILSGRDMIGIAFTGSGKTLVFVLPMIMLALQEEIMMPIVPGEGPFGLIVCPSRELARQTYEVFEQFLIPLREAGYPELRPLLCIGGVDMRSQLDVVKKGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHLKAQRQTLLFSATMPTKIQNFARSALVKPVIVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPPVLIFCENKADVDDIHEYLLLKGVGAVAVHGGKDQEEREYSIAAFKSGKKDVLVATDVASKGLDFPDIQHVINYDMPDEIENYVHRIGRTGRCGRTGIATTFINKNQTETTLLDLKHLLQEAKQRIPPVLGDLNDPMDDNDEITGKSGVKGCAYCGGLGHRIRDCPKLEHQKSMAIANSRRDYFGSGGYRGEI 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele43g0633 627 Gene3D - 407 569 IPR027417 -
Lele43g0633 627 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 258 543 IPR027417 -
Lele43g0633 627 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 182 210 IPR014014 GO:0003724
Lele43g0633 627 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 137 567 - -
Lele43g0633 627 SMART helicmild6 447 528 IPR001650 -
Lele43g0633 627 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 408 568 IPR001650 -
Lele43g0633 627 CDD SF2_C_DEAD 409 537 - -
Lele43g0633 627 FunFam Probable ATP-dependent RNA helicase DDX41 149 398 - -
Lele43g0633 627 SMART c2hcfinal6 585 601 IPR001878 GO:0003676|GO:0008270
Lele43g0633 627 FunFam Probable ATP-dependent RNA helicase DDX41 407 569 - -
Lele43g0633 627 MobiDBLite consensus disorder prediction 61 80 - -
Lele43g0633 627 Coils Coil 539 559 - -
Lele43g0633 627 Gene3D - 151 401 IPR027417 -
Lele43g0633 627 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 213 397 IPR014001 -
Lele43g0633 627 ProSiteProfiles Zinc finger CCHC-type profile. 586 601 IPR001878 GO:0003676|GO:0008270
Lele43g0633 627 CDD DEADc_DDX41 193 398 IPR044113 GO:0000398|GO:0003724|GO:0005524
Lele43g0633 627 Pfam Zinc knuckle 585 601 IPR001878 GO:0003676|GO:0008270
Lele43g0633 627 Pfam DEAD/DEAH box helicase 206 385 IPR011545 GO:0003676|GO:0005524
Lele43g0633 627 Pfam Helicase conserved C-terminal domain 421 528 IPR001650 -
Lele43g0633 627 SMART ultradead3 201 412 IPR014001 -
Lele43g0633 627 SUPERFAMILY Retrovirus zinc finger-like domains 585 606 IPR036875 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele43g0633 Lele-ChrLele43 5588032 5590435 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele43g0633 154 563 Eukaryotic Initiation Factors Gene Family AT3G13920 30.193 1.46e-56 195