LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele43g0625	ATGGAAGATGCCTCCATTTGCCATGAACAACTGCAGGATGGTGAATGCATTGAGGATCAGAAAGAAGGTGGTGTAATAACTGAATTAGATGGTCAAAATGGTTTTTCTGAAGGAAGAAAGGAATTTGTTGCACCTGCTGTTGGGATGGAGTTTGAATCCTATGATGACGCCTACAATTATTATATCTGCTATGCCAAGGAGGTGGGATTTCGTGTAAGGGTGAAAAATTCATGGTTCAAGCGAAATAGCAGGGAAAAGTATGGTGCAGTTCTATGCTGTAGTAGTCAGGGTTTTAAAAGAATAAAAGATGTTAACCATTTAAGAAAGGAAACACGAACTGGTTGCCCTGCAATGATAAGGATGAGGTTAGTGGACTCTCAGAGATGGAGGATACTTGAGGTCACACTTGAACATAACCATCTTTTAGGTGCTAAGTTATGCAGATCGATTAAGAAGATTGGAACTGGAGCCAAACGGAAGCCACTACCTGGTTCTGATAATGAAGTGCGAACAATCAAGTTATACAGGGCACTAGTGATAGATGCAGGAGGTGATGTTAATGCAAACTCAAGTACTAGAGAAGTCAGGACATCTTTGGAATCTTCCAAGAAGTTGGGAGGGTTGCATAATTATGATGCAATCAGGAAAGCACTGAGTAAAGCTGTTTATGAGACAATGAAAGTAATTGAATTTGAAGCCGCATGGGGATTTATGATTCAGCGATTTGCAGTTTGTGATCATGAGTGGCTTCGTTCTATCTATGAAGATCGAGTTCATTGGGCTCCGGTATTCTTGAAGGACACATTTTTTGCTGGAATGTCTATAGCAAGTCCTGGTGAGACCTTGATTCCTTTTTTTGAGAAATATGTGCACAAACAGACTCCTTTGAAGGAGTTTCTTGACAAGTATGAATTAGCACTTCATAAGAAGCACAAGGAAGAATCTGCTGCTGACATTGACTCGAGAAGCTCTACTCCGTTGTTGAAAACAAGATGTTCTTTTGAATTGCAGCTCTCCAGAATCTACACACGAGAAATATTCATGAAGTTCCAATATGAAGTTGAAGAAATGTATTCTTGTTTTAGTACCACACAGTTACATGTGGATGGCCCAATCATAATTTTCTTGGTCAAGGATCGTGTTTTAAGTGAAGGAAATAGAAGGGAGATCAAGGATTTTGAAGTCTTGTACAACAGGACCGCTGGAGAAGTTCGCTGCATCTGTAGCTGCTTTAACTTCAACGGGTATTTATGTAGGCATGCACTGTGTGTGCTCAATTTTAATGGGGTGGAGGAGATACCTTCCAGATACATCCTTTCCAGGTGGAAAAAAGATTACAAGCGCCTACATGTTCCTGATCACAACTCCGGTATCATTGACGAGAATGACCGTATTCAATGGTTTAATCAGTTATTTAGAAGCTCCTTGCAAGTTGTGGAGGAAGGGGCAATTTCTCTAGACCACTATAATGTAGCTTTGCATGCTTTTCAGGAATCATTGAGTAGGATACATGATGTAGAGCAGAGACAGAAGGAACCTTCAAATTTGTAA	1551	0.403	MEDASICHEQLQDGECIEDQKEGGVITELDGQNGFSEGRKEFVAPAVGMEFESYDDAYNYYICYAKEVGFRVRVKNSWFKRNSREKYGAVLCCSSQGFKRIKDVNHLRKETRTGCPAMIRMRLVDSQRWRILEVTLEHNHLLGAKLCRSIKKIGTGAKRKPLPGSDNEVRTIKLYRALVIDAGGDVNANSSTREVRTSLESSKKLGGLHNYDAIRKALSKAVYETMKVIEFEAAWGFMIQRFAVCDHEWLRSIYEDRVHWAPVFLKDTFFAGMSIASPGETLIPFFEKYVHKQTPLKEFLDKYELALHKKHKEESAADIDSRSSTPLLKTRCSFELQLSRIYTREIFMKFQYEVEEMYSCFSTTQLHVDGPIIIFLVKDRVLSEGNRREIKDFEVLYNRTAGEVRCICSCFNFNGYLCRHALCVLNFNGVEEIPSRYILSRWKKDYKRLHVPDHNSGIIDENDRIQWFNQLFRSSLQVVEEGAISLDHYNVALHAFQESLSRIHDVEQRQKEPSNL	516

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele43g0625	516	Pfam	FAR1 DNA-binding domain	59	142	IPR004330	-
	Lele43g0625	516	ProSiteProfiles	Zinc finger SWIM-type profile.	393	429	IPR007527	GO:0008270
	Lele43g0625	516	Pfam	SWIM zinc finger	403	425	IPR007527	GO:0008270
	Lele43g0625	516	SMART	26again6	404	431	IPR006564	GO:0008270
	Lele43g0625	516	PANTHER	PROTEIN FAR1-RELATED SEQUENCE 10-RELATED	208	505	IPR031052	GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele43g0625	Lele-ChrLele43	5530324	5532339	Dispersed/Wgd

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	FAR1	Lele43g0625		FAR1	3.4e-21	CL0274