Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele43g0623 ATGACTAAATACTGCATCATCGCGACATTTTTGCTTCTTTCAAATTCAATGGCAGCTGTTTCTTTCTCTTTTCAACCTCATCTGCGTCCCTCCTCTGCTCCTCCTCCTCCTCCTCCTTCGTCGTCGTCGTCTTTTTTGTGTGGTGGTGTCCATCTTTGGACTCACAAGAACTTCATCTCTATCCATTCACCTTCCCATTTTTCATCTTCGACTTTAAATAACAAGTCCTCCTCGAGGAGCTTCCGAACGGCGATTGCTGCTTCTGGCGACTATTATGCGACTCTTGGAGTCTCCAAATCAGCGACTAACAAGGAGATTAAGGCGGCTTATCGAAAGTTAGCTCGTCAGTACCATCCTGATGTGAACAAGGAACCTGGAGCTATTGACAAGTTCAAGGAAATTAGTTCTGCATATGAGGTGCTATCAGATGATAAGAAGAGGGTTTTGTATGATCAATATGGAGAGGCTGGAGTTAAGAGTGCAGTAGGAGGAGCATCAAATGCTTATACGACTAATCCATTTGATTTGTTTGATACATTTTTTGGGCCAAGTATGGGTGGCTTTGGTGGTATTGATCCAACTGGATTTGGAACACGCCGTCGTAGTACTGTTACTAAGGGTGGAGACATTCGTTATGATATTTTGTTGGAATTTTCGGAGGCAATTTTTGTCGCTGAAAAGGAATTTGAGCTTTCCCATTTGGAAAAATGTGAAGCTTGTAATGGTACTGGAGCAAAGATTGGCTCCAAGATGAGAATATGCTCAACTTGTGGAGGGAGAGGTCAGGTGATGAGGACTGAACAAACACCTTTTGGTTTGTTCTCACAGGTTTCTGTATGTCCAAACTGTGGAGGGGATGGTGAAATCATATCTGAATTTTGTCGTAAATGTAATAGTGAAGGACGTATTCGGGTTAAGAGAAATATTAACGTAAAAGTTCCTCCAGGGGTTAGCTCAGGCAGTATTCTGAGAGTTTCTGGTGAGGGTGATGCTGGACCTCGAGGGGGTCCTCCTGGAGATCTATTTGTGTATCTTGAACTGGAAGAGATTCCAGGAATTCAAAGAGATGGCATTAATCTCTCCTCAATGATAACTATCGGTTATCTGGATGCCATACTAGGGGTGGTTGTCGAGGTAAATACAGTTGAAGGCGTTTCTGAACTACAAATTCCCCCCGGTACCCAACCTGGAGATGTCCTTGTCCTTGGAAGGAAAGGTGCACCAAAATTAAACAAACCATCCATACGTGGTGACCACTTATTCACGGTTCAAGTTACAATACCAAAACGTATCAGTTTAAAGGAGCGCGAGTTGCTTGAAGAACTTGCTTCACGAGGCACCAAGACGAGTAGCTCTTCAAAACCCCGTCTTAGTATTCACTCTTCCTAGGGAAGGGCTGAAGATCCTGCAGCTCAAAGTGCTGAAAGTCCCACAATGGTTGAAGAAAAAACTGAACAGTCAGAAGACCAGGATGACATAAGGAAGAAATTAAAGAATTTTGCTGGGTCCGTGGCAAATGGAGCTCTGAAGTGGCTAAAAGATAACCTGTAG 1551 0.4358 MTKYCIIATFLLLSNSMAAVSFSFQPHLRPSSAPPPPPPSSSSSFLCGGVHLWTHKNFISIHSPSHFSSSTLNNKSSSRSFRTAIAASGDYYATLGVSKSATNKEIKAAYRKLARQYHPDVNKEPGAIDKFKEISSAYEVLSDDKKRVLYDQYGEAGVKSAVGGASNAYTTNPFDLFDTFFGPSMGGFGGIDPTGFGTRRRSTVTKGGDIRYDILLEFSEAIFVAEKEFELSHLEKCEACNGTGAKIGSKMRICSTCGGRGQVMRTEQTPFGLFSQVSVCPNCGGDGEIISEFCRKCNSEGRIRVKRNINVKVPPGVSSGSILRVSGEGDAGPRGGPPGDLFVYLELEEIPGIQRDGINLSSMITIGYLDAILGVVVEVNTVEGVSELQIPPGTQPGDVLVLGRKGAPKLNKPSIRGDHLFTVQVTIPKRISLKERELLEELASRGTKTSSSSKPRLSIHSSXGRAEDPAAQSAESPTMVEEKTEQSEDQDDIRKKLKNFAGSVANGALKWLKDNL 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele43g0623 516 FunFam Chaperone protein dnaJ 1, mitochondrial 348 455 - -
Lele43g0623 516 FunFam Chaperone protein dnaJ A6 chloroplastic 237 301 - -
Lele43g0623 516 Gene3D - 237 301 - -
Lele43g0623 516 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 60 449 - -
Lele43g0623 516 SUPERFAMILY HSP40/DnaJ peptide-binding domain 205 358 IPR008971 GO:0006457|GO:0051082
Lele43g0623 516 Pfam DnaJ central domain 237 301 IPR001305 GO:0031072|GO:0051082
Lele43g0623 516 Gene3D - 353 445 - -
Lele43g0623 516 Gene3D - 207 343 - -
Lele43g0623 516 Pfam DnaJ C terminal domain 210 428 IPR002939 -
Lele43g0623 516 SMART dnaj_3 89 146 IPR001623 -
Lele43g0623 516 MobiDBLite consensus disorder prediction 481 495 - -
Lele43g0623 516 FunFam Putative Mitochondrial DnaJ chaperone 295 343 - -
Lele43g0623 516 CDD DnaJ 90 143 IPR001623 -
Lele43g0623 516 FunFam Chaperone protein dnaJ A6 chloroplastic 87 193 - -
Lele43g0623 516 SUPERFAMILY Chaperone J-domain 88 196 IPR036869 -
Lele43g0623 516 TIGRFAM DnaJ_bact: chaperone protein DnaJ 90 444 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Lele43g0623 516 Gene3D DnaJ domain 87 190 IPR036869 -
Lele43g0623 516 MobiDBLite consensus disorder prediction 444 459 - -
Lele43g0623 516 SUPERFAMILY HSP40/DnaJ peptide-binding domain 354 439 IPR008971 GO:0006457|GO:0051082
Lele43g0623 516 ProSiteProfiles dnaJ domain profile. 90 154 IPR001623 -
Lele43g0623 516 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 226 304 IPR036410 -
Lele43g0623 516 ProSiteProfiles Zinc finger CR-type profile. 224 306 IPR001305 GO:0031072|GO:0051082
Lele43g0623 516 MobiDBLite consensus disorder prediction 444 495 - -
Lele43g0623 516 Hamap Chaperone protein DnaJ [dnaJ]. 87 500 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Lele43g0623 516 ProSitePatterns Nt-dnaJ domain signature. 131 150 IPR018253 -
Lele43g0623 516 CDD DnaJ_C 302 431 - -
Lele43g0623 516 Pfam DnaJ domain 90 151 IPR001623 -
Lele43g0623 516 CDD DnaJ_zf 237 301 IPR001305 GO:0031072|GO:0051082
Lele43g0623 516 PRINTS DnaJ domain signature 126 146 IPR001623 -
Lele43g0623 516 PRINTS DnaJ domain signature 92 110 IPR001623 -
Lele43g0623 516 PRINTS DnaJ domain signature 110 125 IPR001623 -
Lele43g0623 516 PRINTS DnaJ domain signature 146 165 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele43g0623 Lele-ChrLele43 5508187 5515420 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele43g0623 76 197 C2H2 Transcription Factor Family AT1G74250 35.821 1.56e-09 58.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele41g0774 41 17603219 17609388 Lele43g0623 43 5508187 5515420 hybridization
Lele42g0766 42 20684308 20691647 Lele43g0623 43 5508187 5515420 hybridization