Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele43g0603 ATGGCGCAGATTTTGCTCCATGGGACTCTCCATGTCACGATCTTTGAGGTGGATAGATTGAAGAGCGGTGGTGGCAATATCTTCAGCAAGCTCAAGGAAAATTTTGAGGAGGCAGTTGGTTTTGGAAAGGGAGTTACTAAACTCTATGCAACCATCGATCTTGAGAAGGCCAGAGTTGGAAGGACTAGAATTCTAGAGAATGAACATTCCAACCCTAGGTGGTATGAGTCTTTTCACATTTATTGTGCTCACATGGCTTCTGATATTATATTCACTGTGAAAGATGATAATCCTATTGGGGCAACCTTGATTGGAAGAGCACATGTGCCTGTTACGGATGTCTTGGATGGTGAAGAAATAGATAGGTGGGTTGAAATCTTGGATGAGAACCAGAATCCCATTCATGGTGATTCAAAAATCCATGTGAAACTGCAATATTTTGATGTCACCAAAGACCGCAGCTGGGCTCGTGGTGTTAGAAGTGGTAAATATCCTGGTGTTCCATACACTTTCTTCTCACAGAGACAAGGATGTAAGATCTCTCTGTACCAAGATGCTCATATCCCAGATAAATTTGTCCCTGAAATACCTCTCGTTGGAGGTGAGAAATATGATGGTCATAGATGTTGGGAGGATGTTTTTGATGCAATCACTAATGCCAAGCACTTAATATACATTACTGGTTGGTCTGTGTATACCGAGATCTCCTTGGTAAGGGATAAAAGGAGGCCAAAGCCCGGGGGAGACATAACCCTTGGTGAGCTCCTCAAGAAAAAGGCAAGTGAAGGTGTCAGGGTTTTAATGCTTGTTTGGGATGATAGAACATCTGTTGGTTTGTTAAAAAAAGATGGATTGATGGCTACTCATGATGAAGAAACTGAGCATTACTTCCATGACACTGATGTGCATTGTGTTTTATGTCCCCGCAATCCTGATGATGGGGGAAGCATTATTCAGGACTTGCAAATTTCTACCATGTTCACCCATCATCAGAAGATTGTGGTGGTGGACAGTGAATTACCAAGTGCAGGATCAGAGCAGCGAAGAATTGTTAGTTTCGTTGGGGGTATTGATCTCTGTGATGGTAGGTATGATACTCCCTTCCATTCACTGTTCAGAACTCTAGACACAGCACACCATGATGACTTTCATCAACCCAACTTTCCTGGCGCTGCGATCACGAAAGGTGGTCCCAGGGAGCCTTGGCATGACATCCATTCCCGGCTTGAAGGACCCATTGCTTGGGATATTTTATATAACTTTGAACAGAGATGGAGGAAGCAAGGTGGGAAGGATGTACTTGTTCAGTTGAGAGAGCTTCAAGATGTCATCATTCCTCCATCCCCGGTTATGTTTCCTGATGATCATGAGACATGGAATGTTCAGCTATTTAGATCTATCGATGGTGGGGCTGCTTTTGGGTTTCCAGAGACTCCTGAAGATGCTGCCAAAGCTGGGCTCATTAGTGGGAAGGATAATATTATTGATCGTAGTATTCAAGATGCTTATATTCATGCCATTCGACGAGCGAAGGATTTCATCTATATTGAAAATCAGTACTTCCTTGGAAGCTCTTTTGCTTGGAGTGCTGATGGTATCAAACCTGAGGACATAAATGCTTTGCATGTCATCCCAAAGGAGCTTTCACTTAAAATTGTTAGTAAGATCGAAGCTGGGGAAAGATTCACCGTGTATGTTGTGGTCCCAATGTGGCCAGAGGGTGTCCCAGAAAGTGCATCAGTGCAGGCAATATTGGACTGGCAGAGGAGGACAATGGAGATGATGTACAAAGATGTTATTCAGGCACTTAGGGCCAATAGAATTGATGAAGATCCTCGTAACTATTTGACATTCTTCTGCCTCGGTAATCGGGAGTTGAAGAAACATGGAGAGTACGAGCCTTCAGAAAGACCAGATCCTGATTCTGATTATTTGAGAGCTCAAGAGGCTCGACGCTTCATGATCTATGTTCATGCCAAGATGATGATAGTTGATGACGAGTACATAATCATAGGATCTGCCAACATCAACCAGAGATCAATGGATGGTGCCAGGGACTCAGAGATTGCCATGGGTGCCTATCAACCCTATCATTTGACTCACAGGCAGCCTGCACGCGGTCAGATCCATGGTTTCCGCTTGTCATTGTGGTATGAGCACCTCGGTATGCTCGACGATTCCTTCCTCCAACCTCAAAGCCAAGAATGTGCCAGGAAGGTGAACCAGATGGGTGACAAGTACTGGGACCTCTATTCAAGTGAGTCGGTGGAACACGACCTTCCCGGACACCTGCTTCGCTACCCCATCGGGATTTCTGAAGAAGGAGAAATCACAGAGCTGCCAGGATTTGAATTTTTCCCAGACACCAAGGCTCGTGTCCTTGGTGGCAAAGCCGACTACATGCCACCGATCCTTACAACTTAA 2424 0.4472 MAQILLHGTLHVTIFEVDRLKSGGGNIFSKLKENFEEAVGFGKGVTKLYATIDLEKARVGRTRILENEHSNPRWYESFHIYCAHMASDIIFTVKDDNPIGATLIGRAHVPVTDVLDGEEIDRWVEILDENQNPIHGDSKIHVKLQYFDVTKDRSWARGVRSGKYPGVPYTFFSQRQGCKISLYQDAHIPDKFVPEIPLVGGEKYDGHRCWEDVFDAITNAKHLIYITGWSVYTEISLVRDKRRPKPGGDITLGELLKKKASEGVRVLMLVWDDRTSVGLLKKDGLMATHDEETEHYFHDTDVHCVLCPRNPDDGGSIIQDLQISTMFTHHQKIVVVDSELPSAGSEQRRIVSFVGGIDLCDGRYDTPFHSLFRTLDTAHHDDFHQPNFPGAAITKGGPREPWHDIHSRLEGPIAWDILYNFEQRWRKQGGKDVLVQLRELQDVIIPPSPVMFPDDHETWNVQLFRSIDGGAAFGFPETPEDAAKAGLISGKDNIIDRSIQDAYIHAIRRAKDFIYIENQYFLGSSFAWSADGIKPEDINALHVIPKELSLKIVSKIEAGERFTVYVVVPMWPEGVPESASVQAILDWQRRTMEMMYKDVIQALRANRIDEDPRNYLTFFCLGNRELKKHGEYEPSERPDPDSDYLRAQEARRFMIYVHAKMMIVDDEYIIIGSANINQRSMDGARDSEIAMGAYQPYHLTHRQPARGQIHGFRLSLWYEHLGMLDDSFLQPQSQECARKVNQMGDKYWDLYSSESVEHDLPGHLLRYPIGISEEGEITELPGFEFFPDTKARVLGGKADYMPPILTT 807
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele43g0603 807 FunFam Phospholipase D delta 200 443 - -
Lele43g0603 807 FunFam Phospholipase D 466 699 - -
Lele43g0603 807 Pfam Phospholipase D C terminal 725 796 IPR024632 -
Lele43g0603 807 ProSiteProfiles C2 domain profile. 1 124 IPR000008 -
Lele43g0603 807 PIRSF PLD_plant 1 807 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Lele43g0603 807 Gene3D C2 domain 6 157 IPR035892 -
Lele43g0603 807 SUPERFAMILY Phospholipase D/nuclease 444 736 - -
Lele43g0603 807 Pfam C2 domain 8 126 IPR000008 -
Lele43g0603 807 CDD PLDc_pPLDalpha_2 491 700 - -
Lele43g0603 807 Gene3D Endonuclease Chain A 199 442 - -
Lele43g0603 807 SMART pld_4 325 363 IPR001736 GO:0003824
Lele43g0603 807 SMART pld_4 653 680 IPR001736 GO:0003824
Lele43g0603 807 CDD C2_plant_PLD 2 147 - -
Lele43g0603 807 PANTHER PHOSPHOLIPASE D 4 795 IPR015679 -
Lele43g0603 807 Gene3D Endonuclease Chain A 478 697 - -
Lele43g0603 807 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 325 363 IPR001736 GO:0003824
Lele43g0603 807 Pfam Phospholipase D Active site motif 325 363 IPR001736 GO:0003824
Lele43g0603 807 Pfam Phospholipase D Active site motif 654 680 IPR001736 GO:0003824
Lele43g0603 807 SUPERFAMILY Phospholipase D/nuclease 150 444 - -
Lele43g0603 807 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 6 149 IPR035892 -
Lele43g0603 807 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 653 680 IPR001736 GO:0003824
Lele43g0603 807 SMART C2_3c 9 123 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele43g0603 Lele-ChrLele43 5392513 5395573 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele43g0603 1 807 Phospholipase D Gene Family (Wang group) AT3G15730 81.728 0.0 1420
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele38g0441 38 3591895 3595440 Lele43g0603 43 5392513 5395573 CCT
Lele39g0953 39 18377264 18380997 Lele43g0603 43 5392513 5395573 CCT
Lele40g0415 40 3418491 3421283 Lele43g0603 43 5392513 5395573 CCT
Lele41g0797 41 17728328 17731481 Lele43g0603 43 5392513 5395573 hybridization
Lele42g0786 42 20811183 20815091 Lele43g0603 43 5392513 5395573 hybridization