Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele43g0562 ATGGAAAAGGATCGAGGTTTGGAACTTGAGATAACGGAGCTGAGGTTGGGACTTCCTGGGAGGGAGAAGAAGAATGGGAAGAAGAGGATGTTCTCGGAGATTGATGATGATCATGAGGAGGAGGGTGGTGGTGGAGAGGATCAGAACAGCTCGTCGGAGGGAGATCAGCGGAAGGTGGTGGTGGGGTGGCCGCCAGTGTGCTCGTACAGGAGGAAGAATAGCATGATGAACAACAATGAAGGGTCAAAAATGTACGTGAAAGTGAGCATGGATGGAGCTCCGTTCTTACGCAAAATTGACTTGAAAAAGCTTAAGGCTTACTCTGATCTCGCTCTCGCCTTGGAAAATCTCTTTGGTTGCTATGGAATCAATGAGGCGTTGAAGAATGGAGACAAAAGCGAACACGTTCCCATTTATGAGGACAAAGACGGTGACTGGATGCTCGTTGGCGATGTCCCTTGGGAAATGTTTATGGAATCGTGCAAGAGGTTGAGGATAATGAAGAGATCAGACGCAAAAGGATTTGGTGTGACACCAAAAGGGTCTCTAATTAAAGGATATAAGATAGTAGGCGTCACCCACAGATGA 588 0.4728 MEKDRGLELEITELRLGLPGREKKNGKKRMFSEIDDDHEEEGGGGEDQNSSSEGDQRKVVVGWPPVCSYRRKNSMMNNNEGSKMYVKVSMDGAPFLRKIDLKKLKAYSDLALALENLFGCYGINEALKNGDKSEHVPIYEDKDGDWMLVGDVPWEMFMESCKRLRIMKRSDAKGFGVTPKGSLIKGYKIVGVTHR 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele43g0562 195 Gene3D - 77 180 - -
Lele43g0562 195 FunFam Auxin-responsive protein 78 179 - -
Lele43g0562 195 MobiDBLite consensus disorder prediction 18 57 - -
Lele43g0562 195 ProSiteProfiles PB1 domain profile. 83 171 IPR000270 GO:0005515
Lele43g0562 195 MobiDBLite consensus disorder prediction 18 36 - -
Lele43g0562 195 SUPERFAMILY CAD & PB1 domains 73 168 - -
Lele43g0562 195 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 7 172 IPR003311 GO:0005634|GO:0006355
Lele43g0562 195 Pfam AUX/IAA family 26 175 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele43g0562 Lele-ChrLele43 5054285 5058128 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele43g0562 72 183 B3 DNA Binding Superfamily AT4G23980 33.929 2.91e-10 57.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Lele43g0562 AUX_IAA 2.6e-46 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele37g0420 37 3476957 3478483 Lele43g0562 43 5054285 5058128 CCT
Lele41g0833 41 18044366 18047882 Lele43g0562 43 5054285 5058128 hybridization
Lele42g0821 42 21129481 21133391 Lele43g0562 43 5054285 5058128 hybridization