Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele43g0560 ATGGATGTTACCTCTTCAGAACCAAATAGAAAATCCCAAACTGACAGATATCCGTTGCTGATGGAGCAGTCTGAAAGCCACCATCAGCATGTAATTGACATCACAAGGAATGGTGATGCTTTATCCAACTCATCTCATGTTGCTCAACTTCCTGAAATACATTCAATGCAGAATGAAGATCAACAGTCCAGTGGTACACTAGACCCTACTCATCAAACATCTTCCTCATCTAGATTGAACTCTAGAAATTTTTCATCAACTAGAGGTGAGGGGTATCATCATCGAAGAAGGAATCCGTTAAATTCTGGATTATGGATTTCAGTTGAGCTTGTTGTCACTGTGGGTCAGATCATAGCATCTATAGTTGTCTTGTCATTGTCAAGGAATGAAAATCCACAGGCCCCATTATTTGCATGGGTTGTGGGTTATACATCTGGTTGTGTTGCCACACTTCCTATTCTATATTGGCGGTATCGAAGCCGTAATCAAAGTAATGAACAAGATGCATCTCAACAATCTCAAGGACCTTCTGGAAGTGATCATCCATTACCTACCTCCTACACTGCTGTCTCCAATGCTCATGTTTCAGATGATGAGAATAGTCATGTGACAGCATCAGCTGCTAGAAACTCTAGGATTCCTGGAGCTTTTCTTTCTAGGCTTAATGGATTAGTAGATCATTTCAAAATGGCCTTAGATTGCTTCTTTGCTGTTTGGTTTGTTGTGGGCAACGTGTGGATCTTTGGAGGGCACACTTCTTCTTCGGATGCTCCAAAATTGTATAGGTTATGTATTGTGTTTCTTACCTTTAGCTGCATTGGATATGCTATGCCATTTATCCTATGTGCAACAATTTGTTGCTGCCTACCTTGCATAATTTCTGTCCTTGGGATTCGGGAGGATTTTTCTCAAATTAGAGGTGCAACAGTAGAGTCTATCAATGCGCTGCCAATTTACAAGTTCAAATTGAAGAAAACCGAAAATAGTGACAATCAGGATGTCAACACAGCTATAGATGAAGGTGGCATCTTCGCTGCAGGGACAGAAAAGGAGCGGGCCATATCTGGAGAAGATGCTGTTTGTTGCATTTGCTTGGCGAAATATGCAGACAATGATGATCTTAGGGAGTTACCCTGTCTTCATTTCTTTCACGTAGAGTGTGTCGACAAATGGTTGAAGATAAACGCATCATGTCCTCTTTGTAAAAGTGATGTTGGCATGGTTAGAGGAGACTCTCCTTCAGCTGGGGACTCCAGTTAG 1260 0.4151 MDVTSSEPNRKSQTDRYPLLMEQSESHHQHVIDITRNGDALSNSSHVAQLPEIHSMQNEDQQSSGTLDPTHQTSSSSRLNSRNFSSTRGEGYHHRRRNPLNSGLWISVELVVTVGQIIASIVVLSLSRNENPQAPLFAWVVGYTSGCVATLPILYWRYRSRNQSNEQDASQQSQGPSGSDHPLPTSYTAVSNAHVSDDENSHVTASAARNSRIPGAFLSRLNGLVDHFKMALDCFFAVWFVVGNVWIFGGHTSSSDAPKLYRLCIVFLTFSCIGYAMPFILCATICCCLPCIISVLGIREDFSQIRGATVESINALPIYKFKLKKTENSDNQDVNTAIDEGGIFAAGTEKERAISGEDAVCCICLAKYADNDDLRELPCLHFFHVECVDKWLKINASCPLCKSDVGMVRGDSPSAGDSS 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele43g0560 419 MobiDBLite consensus disorder prediction 56 98 - -
Lele43g0560 419 ProSiteProfiles Zinc finger RING-type profile. 361 402 IPR001841 -
Lele43g0560 419 SMART ringv_2 360 402 IPR011016 GO:0008270
Lele43g0560 419 MobiDBLite consensus disorder prediction 56 87 - -
Lele43g0560 419 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 342 409 IPR013083 -
Lele43g0560 419 CDD RING-H2_RNF111_like 360 404 - -
Lele43g0560 419 FunFam E3 ubiquitin-protein ligase 344 410 - -
Lele43g0560 419 SMART ring_2 361 401 IPR001841 -
Lele43g0560 419 SUPERFAMILY RING/U-box 354 410 - -
Lele43g0560 419 Pfam Ring finger domain 361 402 IPR001841 -
Lele43g0560 419 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 21 405 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele43g0560 Lele-ChrLele43 5036464 5039553 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele43g0560 1 406 C3H Transcription Factor Family AT1G80400 57.702 4.52e-166 470
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele41g0835 41 18066920 18070305 Lele43g0560 43 5036464 5039553 hybridization
Lele42g0822 42 21145757 21148710 Lele43g0560 43 5036464 5039553 hybridization