Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele43g0542 ATGGATAATACCAAGGATGATGCAAGATATCCCCCTATTATGTATGGTGATAAAAACCATCATGGTTATGGCAATCTGAATCATCGAAAACATTCGGTTAGGAATTCTCCATGTTCTCAGCCGATCACAAATGAGTATGTTGAAGATAATGATGAGGATGAGGATGAGGATGGAGAAGATGATGTGGAACTTTTAGGAGACGAGGAAGATGATGATGCTGATCAGAGTAATAGTATTTATTTGCAAAATGATGTTGGTGACAATGATTATGATGAAGGTGACGATGAAAACTATGGTATCAATGACAACAATGATGATGGTAATGATGACACTGATGGTGATGATGATGGTAGTAAGAAGAAGAGTTATAAGAAGAGAGTTGAAGAGGATTCAGAATGGCATCCGAAAAAGCGAAAGCTGAAAAGCTTGATTTCAGCTTATGAAGTTGCCCCTCGTGTTCCAGCATCACCATCAGCTGCAGCTCACTCAGAACCAAAACCATATTTTGGCTCCAGGAATCCCCTTACTGACTGGACTGAACATGAGACGTTTTTTCTTCTCGATGCTTGGGGGAACCGGTTTCTTCAACAAGGAAGGAAGAGTCTTCGGTCTGAGCAATGGCAAGAAGTTGCAGAAGAAGTATCAGAAGTTTCAAAAATTGAAAGGACAGATACTCAGTGTCGGAATCGTCTAGACACGTTAAGGAAAAAATACAAAAAAGAGAAAACTAATTTAGCAGAAATGGGTGGTGGATTGAGCAAATGGGTGTATTTCAAAAGGATAGGTAAGCTGTTGTCTTCCCCTCCACAGCAAGCTGGTCTCTCTTGTGGTTTAGACTCAGGAGAGTATGTTTTTATGAACCCTAGAGTTTATTTGAACCGTGCAAATGGGTTAGATGAAATGAGGGATAGTCCAGGGAATTCAGAATCTACTGGTGAAGATGAAGATTTATTATTAGGTGGACTTCATCCAAAGAAAATAAGGCATGGAAGAGGGGACAGTGATGAAACTTCCTTCAGATTGCTCGCTGAATCCATTCAGAAATTCGGCGAGATATATGAGAAGATTGAAAATAGCAGAAGGCAGCAGACGGTGGAACTGGAAAAGATGAGAATGGATTTCCATAGAGAATTGGAAACACGGAAGAGGCAGATATTAGAGAGATTGCAAGGCGAGATTGCAAAACTGGACCAGAGAGATAATGAGGATAATGATGATCCTGTCGAGAAGGCTGAGTAA 1239 0.4052 MDNTKDDARYPPIMYGDKNHHGYGNLNHRKHSVRNSPCSQPITNEYVEDNDEDEDEDGEDDVELLGDEEDDDADQSNSIYLQNDVGDNDYDEGDDENYGINDNNDDGNDDTDGDDDGSKKKSYKKRVEEDSEWHPKKRKLKSLISAYEVAPRVPASPSAAAHSEPKPYFGSRNPLTDWTEHETFFLLDAWGNRFLQQGRKSLRSEQWQEVAEEVSEVSKIERTDTQCRNRLDTLRKKYKKEKTNLAEMGGGLSKWVYFKRIGKLLSSPPQQAGLSCGLDSGEYVFMNPRVYLNRANGLDEMRDSPGNSESTGEDEDLLLGGLHPKKIRHGRGDSDETSFRLLAESIQKFGEIYEKIENSRRQQTVELEKMRMDFHRELETRKRQILERLQGEIAKLDQRDNEDNDDPVEKAE 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele43g0542 412 FunFam trihelix transcription factor ASIL2 178 240 - -
Lele43g0542 412 Gene3D - 178 240 - -
Lele43g0542 412 Coils Coil 353 373 - -
Lele43g0542 412 MobiDBLite consensus disorder prediction 46 75 - -
Lele43g0542 412 MobiDBLite consensus disorder prediction 87 112 - -
Lele43g0542 412 MobiDBLite consensus disorder prediction 1 138 - -
Lele43g0542 412 MobiDBLite consensus disorder prediction 113 138 - -
Lele43g0542 412 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 168 403 IPR044823 -
Lele43g0542 412 MobiDBLite consensus disorder prediction 29 45 - -
Lele43g0542 412 Coils Coil 386 406 - -
Lele43g0542 412 ProSiteProfiles Myb-like domain profile. 178 235 IPR001005 -
Lele43g0542 412 Pfam Myb/SANT-like DNA-binding domain 177 261 IPR044822 -
Lele43g0542 412 MobiDBLite consensus disorder prediction 390 412 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele43g0542 Lele-ChrLele43 4897410 4898648 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele43g0542 332 399 Trihelix Transcription Factor Family AT3G14180 44.118 8.22e-11 61.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Lele43g0542 Myb_DNA-bind_4 6.8e-21 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele41g0850 41 18199678 18200859 Lele43g0542 43 4897410 4898648 hybridization
Lele42g0840 42 21292608 21294182 Lele43g0542 43 4897410 4898648 hybridization