Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele43g0521 ATGTCCAACGATCATCATCACTACTTTCCCTCCCCTGCTCTCTCTCTCAGCCTCGCGGGAATCTTTCGCCATGATGATGAGGTGGCGCCGTCGAGCAACGCTGAGGTGGAAGAGGCAGGCGGAGGAGGCGGGCGGCGAGACAACACTATCGTTCAAGAGATTAGCAGCGAGAATTCTGGTGGGCTGATTGGGAGATCGTCGAGATCGGAGGATGGCTTCGAGGAAGAAGGCGACGAAGATGTTGAAGGTGACGGAGACAAGAACAAGAAGAACAAGAAAAAGAGGAAGAGATATCATAGGCACACTGCTGAGCAGATCAGAGTACTGGAAGCACTTTTCAGAGAGTCGCCACATCCTGATGAGAACCAGAGACAAGAGCTTAGCCAGCAATTAGGCCTTGCTCCTAGGCAAGTCAAGTTCTGGTTCCAAAATCGTCGAACCCAAATAAAGGCTATACAAGAGCGCCATGAGAATTTATTGCTAAAGTCAGAAATGGATAAACTTAGAGAGGAAAATGAAGGCTTGAGAGGGATCATGAACAAGGGCTGTTGCTCCAACTGTGGCGTTGCCACCATTTCCTCAGATTCTCCCATGCTTCCTGAACAACACCAACTACGTCTAGAAAATGCCAAACTCAAAGCTGAGATTGAGAAGCTTCGAACAGCAAATCAATGGAAGGAAATGTTTCCCAGCTTATTATCGAAGGCAGCTATTGTTGATGTTATTTCTAGCGGTGAAGGTGCTAACAGGGATGGTGCGGTGCAACTGATGTTCAGCGAGTGGCATGTGAGAACTGGCGGTGAGCACGTGCAGTCTATCGTAAACTTGGCCAAAGGAAAACATCGAGGCAACGCTGTAACGATCCAGGCAGTTAAATCGGAAGACGACGAGGATATTGGCAACACTACTGGGCAGTGGGATTTGTATGGATCTGATGCCCCTTCTCCTTACAACCCTCTTCAGAGCAAGTTCTTCGAGACATTTGCAGCTCCATTCACAAAGAGGGGATTGTTGCTCAAGTTCTTGATATTGGGAGGTGGCTCTACTCTCGCCTACTTCAGTGCCACAGCTACTGGTGACGTTCTTCCAATCAAGAATGGCCCACAACTTCCACCTAAGCCTGGTCCACGTGGCAAGATCTAA 1143 0.4882 MSNDHHHYFPSPALSLSLAGIFRHDDEVAPSSNAEVEEAGGGGGRRDNTIVQEISSENSGGLIGRSSRSEDGFEEEGDEDVEGDGDKNKKNKKKRKRYHRHTAEQIRVLEALFRESPHPDENQRQELSQQLGLAPRQVKFWFQNRRTQIKAIQERHENLLLKSEMDKLREENEGLRGIMNKGCCSNCGVATISSDSPMLPEQHQLRLENAKLKAEIEKLRTANQWKEMFPSLLSKAAIVDVISSGEGANRDGAVQLMFSEWHVRTGGEHVQSIVNLAKGKHRGNAVTIQAVKSEDDEDIGNTTGQWDLYGSDAPSPYNPLQSKFFETFAAPFTKRGLLLKFLILGGGSTLAYFSATATGDVLPIKNGPQLPPKPGPRGKI 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele43g0521 380 SUPERFAMILY Homeodomain-like 86 153 IPR009057 -
Lele43g0521 380 Coils Coil 151 171 - -
Lele43g0521 380 PRINTS Lambda-repressor HTH signature 132 148 IPR000047 GO:0003677
Lele43g0521 380 PRINTS Lambda-repressor HTH signature 123 132 IPR000047 GO:0003677
Lele43g0521 380 Gene3D - 81 163 - -
Lele43g0521 380 Gene3D - 334 356 - -
Lele43g0521 380 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 217 264 IPR042160 -
Lele43g0521 380 Pfam Photosystem I reaction centre subunit VI 295 380 IPR004928 GO:0009522|GO:0009538|GO:0015979
Lele43g0521 380 Coils Coil 202 222 - -
Lele43g0521 380 CDD homeodomain 99 150 IPR001356 GO:0003677
Lele43g0521 380 ProSitePatterns 'Homeobox' domain signature. 127 150 IPR017970 GO:0000981|GO:0006355
Lele43g0521 380 ProSiteProfiles 'Homeobox' domain profile. 92 152 IPR001356 GO:0003677
Lele43g0521 380 MobiDBLite consensus disorder prediction 49 65 - -
Lele43g0521 380 SMART HOX_1 93 156 IPR001356 GO:0003677
Lele43g0521 380 MobiDBLite consensus disorder prediction 29 101 - -
Lele43g0521 380 FunFam Photosystem I reaction center subunit VI 334 356 - -
Lele43g0521 380 Pfam Homeodomain 95 150 IPR001356 GO:0003677
Lele43g0521 380 FunFam Homeobox-leucine zipper protein HDG1 81 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele43g0521 Lele-ChrLele43 4733250 4741156 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele43g0521 260 295 Homeobox Transcription Factor Family AT1G79840 58.333 2.29e-06 47.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Lele43g0521 PSI_PsaH 8.9e-46 No_clan