Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele43g0493 ATGGCATCTCGCAGACAAATTGCTGCTATGAAACAATCCCTCTTTGATCAGGGATATCTAGATGAACAGTTCATTCAACTTGAGGAGCTGCAGGATGCCGCAAATCCAAACTTCGTTGAAGAAATTGTCACTCTTTATTACCGCGATTCCTCAAGACTTATATCAAACATAGAGCAAGCATTGGAGAGGAACCCACTGGAATTTAACAGGCTAGACACTATGATGCATCAGTTCAAAGGAAGCAGCTCAAGCATCGGAGCCAAAAAGGTGAAAGCAGAGAGCACTCTGTTTAGGGAATATTGCAGGGCCGGAAATGCTGAGGGATGCAAGAGGAGCTTCCAACAACTGAAGAGAGAACATGCCACACTGAGAAATAAGCTTGAAGCTTATTTTCAGCAAGCAAGGCAAACTGGACACTTTGAGGCAGCATGTCGCCCCAAAAATTTAGGACGTCGAATTCGAAGAGGAGGACTCTATCTCCTTCAGATTTCATTTTTCTCTCCTGCCTTTGATTTGGCTTTATTGTCACTGGCCGGCCTCTACTATCCCACAGTTCACCTCTTTGTGATCGCTAGAAAACCAGCAGTAGAGGGCAATCTTCACAACCAGCCTTTTCCACTGCCACTGGACCGCTGAGACATGGGGATTGCATTTGTGACAGCTCTGGTTTTTTGCCTTGCTGTTGGCAGAAGGAGGAGATTGACTTGTGCACTGACACAGAAGAAGATTGACCTGTTAACAGCATGGTGGGTGATGTTACTTTTCCTATGTTTCAGTTCTATATTGTTTATTCTTTTTAACCTTGACTGTCGAAAGCAGGTTCCATTCAAAAAAGAGAGTGGCCAAACAGTCACTGCCCCACTTTTCCAAAGTCAAGAAAACATTGCTGGGAAGATTATAATCGAGCCAATGCAAGGGAAAAAGATTGACCACAATGGCATAAAAGTTGAATTACTGGGACAGATAGAGATGTATTTTGACAGAGGAAACTTTTATGACTTTACTTCCCTTGTGCGAGAACTAGATGTTCCTGGAGATATTTATGAGAAGAAAACTTATCCATTTGAGTTTTCCACAGTTGAAATGCCATATGAGACATATAATGGGGTAAATGTCAGGCTTAGGTATGTTTTGAAAGTGACCATCAGTCGTGGTTATGCAGGAAGCATAATAGAGTACCAGGATTTTGTGATGGAAGTGGGAATTGAAGATTGCCTACACATTGAATTTGAATACAACAAAAGCAAGTATCATCTGAAAGACGTCATCATTGGCAAGATATATTTTCTCCTGGTAAGAATCAAGATAAAAAATATGGACCTTGAGATTAAGCGTCGGGAATCAACAGGTTCAGGGACCAACACCCATGTTGAGACAGAAACATTGGCAAAATTTGAGTTGATGGATGGTGCTCCTGTCCGAGCCAGCGTTCGCCGAGAACAGGGATCTTCACGGACGATTCTTAGTCGATCGCCGAGTCTTGTATCTTCTCCGTTGACAGTGCTCAATCGGTCGCCGAGTCCTGTGTCGTTGCCAAGTCTCTTTGCCATTGATAGTGCTTAG 1563 0.4312 MASRRQIAAMKQSLFDQGYLDEQFIQLEELQDAANPNFVEEIVTLYYRDSSRLISNIEQALERNPLEFNRLDTMMHQFKGSSSSIGAKKVKAESTLFREYCRAGNAEGCKRSFQQLKREHATLRNKLEAYFQQARQTGHFEAACRPKNLGRRIRRGGLYLLQISFFSPAFDLALLSLAGLYYPTVHLFVIARKPAVEGNLHNQPFPLPLDRXDMGIAFVTALVFCLAVGRRRRLTCALTQKKIDLLTAWWVMLLFLCFSSILFILFNLDCRKQVPFKKESGQTVTAPLFQSQENIAGKIIIEPMQGKKIDHNGIKVELLGQIEMYFDRGNFYDFTSLVRELDVPGDIYEKKTYPFEFSTVEMPYETYNGVNVRLRYVLKVTISRGYAGSIIEYQDFVMEVGIEDCLHIEFEYNKSKYHLKDVIIGKIYFLLVRIKIKNMDLEIKRRESTGSGTNTHVETETLAKFELMDGAPVRASVRREQGSSRTILSRSPSLVSSPLTVLNRSPSPVSLPSLFAIDSA 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele43g0493 520 FunFam vacuolar protein sorting-associated protein 26A 250 400 - -
Lele43g0493 520 PANTHER VACUOLAR PROTEIN SORTING 26 RELATED 266 475 IPR028934 GO:0006886
Lele43g0493 520 Gene3D - 252 396 IPR014752 -
Lele43g0493 520 Pfam Hpt domain 41 125 IPR008207 GO:0000160
Lele43g0493 520 Pfam Vacuolar protein sorting-associated protein 26 265 475 IPR028934 GO:0006886
Lele43g0493 520 SUPERFAMILY Histidine-containing phosphotransfer domain, HPT domain 4 137 IPR036641 GO:0000160
Lele43g0493 520 FunFam Histidine-containing phosphotransfer protein 4 1 142 - -
Lele43g0493 520 Gene3D HPT domain 2 143 IPR036641 GO:0000160
Lele43g0493 520 Gene3D - 397 477 IPR014752 -
Lele43g0493 520 ProSiteProfiles Histidine-containing phosphotransfer (HPt) domain profile. 35 130 IPR008207 GO:0000160
Lele43g0493 520 Coils Coil 106 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele43g0493 Lele-ChrLele43 4481572 4491294 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele43g0493 43 4481572 4491294 Lele37g0369 37 3096706 3103461 CCT
Lele43g0493 43 4481572 4491294 Lele38g0346 38 2802942 2812573 CCT
Lele43g0493 43 4481572 4491294 Lele39g1058 39 19194500 19201233 CCT
Lele43g0493 43 4481572 4491294 Lele40g0325 40 2667799 2676387 CCT
Lele38g0331 38 2622252 2628895 Lele43g0493 43 4481572 4491294 CCT
Lele40g0311 40 2502857 2509419 Lele43g0493 43 4481572 4491294 CCT
Lele41g0915 41 18644887 18654110 Lele43g0493 43 4481572 4491294 hybridization
Lele42g0895 42 21701590 21710379 Lele43g0493 43 4481572 4491294 hybridization