Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele43g0489 ATGGGGAAGGCTTCGAGGTGGTTGAAGGGCTTGTTGGGGATGAAGAAAGAGAAGGACCACCACCACCACCACCGCATCGACAATTCTGGTTCATTGGTTTCTGACAAGAAGGAAAAGAAACGATGGAGTTTTGCTAAGTCAGGCAAAGATTCCGATTCTGGTAACAGTCAACCTCGTTTTCCACCTCCTGATTCGACCGCTTCTTGGTATAGATCCTATATGTCGGAAACAGAGAAAGAGCAGAACAAGCACGCAATTGCGGTGGCAGCTGCCACCGCCGCTGCCGCCGATGCTGCAGTCGCCGCCGCTCGGGCCGCCGTTGCGGTGGTAAGACTCACCAGCCACGGCAGAGGAACTCTGTTTAGTGGGAGTCGAGAAAAATGGGCGGCAGTTAAGATTCAAACCGTTTTCAGAGGCTATTTGGCGAGGAAGGCTTTAAGAGCTTTGAAAGGATTGGTTAAGATTCAAGCTTTGGTTCGAGGCTTTCTTGTTCGAAAGCGAGCTACTGCAACTCTGCACAGCATACAAGCTCTGATCAGAGCTCAGACGGCAGTTCGATCACAGAGAGCTCGCCGTTCCATTAGCAAAGAAAATCGAACTAGAAAATCAATGGATCGAGTTGATGAGACAAGAAGCGAGATACACAGTAAAAGGTTATCAACATCGTATGAACAATCCTTCTATGGCTACGACGAGAGTCCCAAAATTGTTGAGATTGATACATACAGGACTCAGTCGAGATCCAGGAGAATAATCGCGACAACGTTTTCAGAATGTGGAGACGAAACACCGTATCAAACGACGCCGTTCCCGGACAGTAAGCACCTTCAGGACTTGGAGTGGGGCTTTACCGGCGACGAGTGCAAATTCTCGACGGCTCAGAGCACTCCTCGTTTCGCAAACAGCGCGCGTTCTCATAACGCGCCTCCGACTCCGGCGAAGAGTGTGTGCGGGGAGACGTTTTGCGGGGCGTACTATAATTTCCCGAACTACATGGCGAATACGCAGTCGTTTAGGGCGAAAGTGAGGTCACAGAGTGCTCCGAAGCAGAGGCCGGAGCAGAAGAAGAGGCTTTCGTTGAATGAGATAATGGCGGCGAGGAACAGCATAAGCAGTGTTAGAATGCAGAGGCCGTCTTGTTCTCAAGTTCAAGAGGAGTCATGGGATTTCTGA 1173 0.5038 MGKASRWLKGLLGMKKEKDHHHHHRIDNSGSLVSDKKEKKRWSFAKSGKDSDSGNSQPRFPPPDSTASWYRSYMSETEKEQNKHAIAVAAATAAAADAAVAAARAAVAVVRLTSHGRGTLFSGSREKWAAVKIQTVFRGYLARKALRALKGLVKIQALVRGFLVRKRATATLHSIQALIRAQTAVRSQRARRSISKENRTRKSMDRVDETRSEIHSKRLSTSYEQSFYGYDESPKIVEIDTYRTQSRSRRIIATTFSECGDETPYQTTPFPDSKHLQDLEWGFTGDECKFSTAQSTPRFANSARSHNAPPTPAKSVCGETFCGAYYNFPNYMANTQSFRAKVRSQSAPKQRPEQKKRLSLNEIMAARNSISSVRMQRPSCSQVQEESWDF 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele43g0489 390 Pfam Protein of unknown function (DUF4005) 296 374 IPR025064 -
Lele43g0489 390 Gene3D - 68 152 - -
Lele43g0489 390 ProSiteProfiles IQ motif profile. 150 177 IPR000048 GO:0005515
Lele43g0489 390 SMART iq_5 148 169 IPR000048 GO:0005515
Lele43g0489 390 SMART iq_5 125 147 IPR000048 GO:0005515
Lele43g0489 390 ProSiteProfiles IQ motif profile. 176 203 IPR000048 GO:0005515
Lele43g0489 390 MobiDBLite consensus disorder prediction 48 68 - -
Lele43g0489 390 ProSiteProfiles IQ motif profile. 126 154 IPR000048 GO:0005515
Lele43g0489 390 PANTHER IQ-DOMAIN 5-RELATED 1 361 - -
Lele43g0489 390 MobiDBLite consensus disorder prediction 189 214 - -
Lele43g0489 390 Pfam IQ calmodulin-binding motif 128 147 IPR000048 GO:0005515
Lele43g0489 390 Pfam IQ calmodulin-binding motif 153 167 IPR000048 GO:0005515
Lele43g0489 390 MobiDBLite consensus disorder prediction 190 214 - -
Lele43g0489 390 MobiDBLite consensus disorder prediction 1 68 - -
Lele43g0489 390 MobiDBLite consensus disorder prediction 23 47 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele43g0489 Lele-ChrLele43 4442025 4443527 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele43g0489 1 375 IQD Protein Family AT3G16490 57.584 9.61e-114 335
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele43g0489 43 4442025 4443527 Lele37g0357 37 3008814 3010476 CCT
Lele43g0489 43 4442025 4443527 Lele39g1069 39 19275970 19277539 CCT
Lele41g0919 41 18691179 18692682 Lele43g0489 43 4442025 4443527 hybridization
Lele42g0899 42 21753738 21755224 Lele43g0489 43 4442025 4443527 hybridization