Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele43g0460 ATGGATGGCCTTCTTCCCTGGGACACTTGTCAATTTGTCTCCAATATGCCTATCTTTGAAGAGGAAGCTGCAGGCTACTCCATGACTAACTTGGATTATCAAGTGCGAGAGACGCAGAATAAAACAGGTCAAATAGATTATCACCATTATCTTTATTCAGCTTTTGATGATGTTGTGCCAGATTATTTCGGCACCGATATGGCCGACGACCACCGACAACAACAACTCATCGATGGCAACAGAGACGACGAAAGAAATATTTCCATGATTCTATCTGATAGCTATAGAAGAAACACATGGAGCTTCAACAACAATGTGAGTTCACTTTCCTCTGGTAAATCTCAGAAGAGTGATAACGCTTCTGCAGCTTCTGGTGGTAGCAGAAAGAACAAAGACGACGTCGTTCAGTGTCACGTCCATGAAATTCAAGAAGCTAATAAGCCTAATCATGCAAAAAGGAGTTTTAAGCTCATTTCAGAGAATAACAATGCCTCAAAACCCAAGAAAACTAGATGGGAACACAACTTGTTATCTTCTTCAAGCATAAATTTTCAGCAGCCAAACTCAAGCATATCATTCAATTCCAGTATTAGCCAAGAGCCTGATCAAGAGGCCATAGCACAAATGAAGGAGATGATATATAGGGCGGCAGCTTTCAGGCCTGTGAACTTAGGGTTGGAGGCAGTGGAAAAGCCAAGAAGGAAGAATGTGAGAATATCCTCAGATCCCCAGACTGTAGCAGCGAGGCAAAGGAGAGAGAGAATCAGTGAGAGAATTAGGGTTTTGCAGAAGATAGTTCCTGGTGGAAGCAAGATGGACACAGCTTCAACGCTTCATGAAGCTGCAAATTATCTCAAGTTTCTCAGGTCACAGGTCAAAGCATTGGAAAGTCTAGGGGACAAGTTTCCTTCCTGTATAATGCATTTTGAGGAATCTGACAAGAAACACATTACATAA 957 0.4201 MDGLLPWDTCQFVSNMPIFEEEAAGYSMTNLDYQVRETQNKTGQIDYHHYLYSAFDDVVPDYFGTDMADDHRQQQLIDGNRDDERNISMILSDSYRRNTWSFNNNVSSLSSGKSQKSDNASAASGGSRKNKDDVVQCHVHEIQEANKPNHAKRSFKLISENNNASKPKKTRWEHNLLSSSSINFQQPNSSISFNSSISQEPDQEAIAQMKEMIYRAAAFRPVNLGLEAVEKPRRKNVRISSDPQTVAARQRRERISERIRVLQKIVPGGSKMDTASTLHEAANYLKFLRSQVKALESLGDKFPSCIMHFEESDKKHIT 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele43g0460 318 MobiDBLite consensus disorder prediction 107 126 - -
Lele43g0460 318 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 244 305 IPR036638 GO:0046983
Lele43g0460 318 MobiDBLite consensus disorder prediction 107 132 - -
Lele43g0460 318 SMART finulus 245 294 IPR011598 GO:0046983
Lele43g0460 318 Pfam Helix-loop-helix DNA-binding domain 249 288 IPR011598 GO:0046983
Lele43g0460 318 Gene3D - 244 304 IPR036638 GO:0046983
Lele43g0460 318 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 239 288 IPR011598 GO:0046983
Lele43g0460 318 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 83 301 IPR045843 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele43g0460 Lele-ChrLele43 4029250 4030859 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele43g0460 128 302 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G21330 61.714 1.28e-59 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele43g0460 HLH 1.9e-06 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele41g0937 41 18914978 18916444 Lele43g0460 43 4029250 4030859 hybridization
Lele42g0909 42 21837715 21838749 Lele43g0460 43 4029250 4030859 hybridization