Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele43g0452 ATGAAATCACAGCTGAAAAAAAATACAAACTTTGTGAGAATATTTGTTTCTGTCGTCATCTTTGATCTTGATTCTTATGCCATTGAGAATAATGGGAAGGAAACAAAAGGGGACGTTCTATTGAAAAATAGAACTTATGCTGTGCAGAACTGGACACTGGCTCTGTCTCCATCGCTCACCCACTTCCTTGAGCGGAAGCCATTAGAAAAAGATAAGATGGCCACAGTATCAGGGCAGCTCATATGGGAGATCGTGAAGAAGAACAACTCGTTTTTGGTTAAAGAGTTTGGCAGGGGCACTCAGAGCGTGGAGTTCAGCAAAGAGAGCAATAATCTCTACAATCTCAACACTTTCAAACACTCTGGTTTGGCAAACAAGAAGACCATCACTATTCAACCTGCGGGTAAAGATCAATCTGTGTTGCTTGCAACTACCAAGACAAAGAAACAGAACAAGCCTGCATCTTTGCTTCATAAATCTGTCATGAAAAAGGAGTTCCCAAGAATGGCAAAGGCTGTGGTAAACCAGGTGTCAGACAACCACTACAGGCCTGATCTTAAGAAGGCAGCCCTTGCAAGATTGAGTGCTGTTCATAGGAGCCTCAAAGTGGCCAAGTCTGGTGTTAAGAAGAGGAACAGACAGTCTGTCAAGGTCCCTGGCAGAAAGTGA 669 0.432 MKSQLKKNTNFVRIFVSVVIFDLDSYAIENNGKETKGDVLLKNRTYAVQNWTLALSPSLTHFLERKPLEKDKMATVSGQLIWEIVKKNNSFLVKEFGRGTQSVEFSKESNNLYNLNTFKHSGLANKKTITIQPAGKDQSVLLATTKTKKQNKPASLLHKSVMKKEFPRMAKAVVNQVSDNHYRPDLKKAALARLSAVHRSLKVAKSGVKKRNRQSVKVPGRK 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele43g0452 222 Gene3D - 77 205 - -
Lele43g0452 222 MobiDBLite consensus disorder prediction 203 222 - -
Lele43g0452 222 Pfam Ribosomal L28e protein family 80 200 IPR029004 -
Lele43g0452 222 FunFam 60S ribosomal protein L28 77 205 - -
Lele43g0452 222 PANTHER 60S RIBOSOMAL PROTEIN L28 73 221 IPR002672 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele43g0452 Lele-ChrLele43 3970114 3974005 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele43g0452 73 215 Cytoplasmic Ribosomal Protein Gene Family AT2G19730 73.427 8.39e-75 221
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele43g0452 43 3970114 3974005 Lele37g0341 37 2851341 2852666 CCT
Lele43g0452 43 3970114 3974005 Lele38g0322 38 2539060 2540382 CCT
Lele43g0452 43 3970114 3974005 Lele39g1083 39 19427918 19429222 CCT
Lele43g0452 43 3970114 3974005 Lele40g0301 40 2427074 2428399 CCT
Lele41g0945 41 18962704 18966922 Lele43g0452 43 3970114 3974005 hybridization
Lele42g0915 42 21883877 21897070 Lele43g0452 43 3970114 3974005 hybridization