Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele43g0433 ATGTTGCAGAAAGGCTCTCTCTGTGTATACGTGTCCTCCAGTCACTGGAGTTTGCAATACTCTTTCCGTGTGGACAAGAGAGACGCTGTAGTTGAGGTTTCGCTTTGTTCGCCCTTCCTTCCAAGTGCTCTGGCACCTGCAACTTCGGCACACAGAGTCGTCGCGAATCGCGTTCGTCATCAACGAATTATGAGTCGCTACGATAGTCGGTCTGGGGACCCTACTTCTTACCGTGACCGGAGAAGTGATTCGGGGCTGGGTGCTCCCACTGGTTACGGTGGTTCTGTCCACTCTTCCTCAAGCAGGAGGGATTACAATGATGGTGGATCCCCAAGGAAATTGAATTTGGATGGCTTGCCTCATTTTGAGAAGAATTTCTATATTGAATCACCAGAGGTGAGGGCTATGACTGAGGCTGAGGTTAACGAGTATCGGCAGAAGAGGGATATAACTGTTGAAGGTCGAGATGTCCCAAAACCAGTCAAAAGCTTTGACCTTGCTGGTTTCCCAGAGTATGTTATGCAAGAAATTACAAAAGCTGGTTTTGTTGAGCCCACACCCATTCAATCTCAAGGTTGGCCAATGGCTTTGAAGGGGCGTGATCTCATAGGCATAGCAGAAACTGGATCAGGGAAGACTCTTGCTTATTTACTGCCTGCAATCGTACATATTAATGCCCAGCCTATTCTAGAACCTGGAGACGGACCAATTGTGCTAGTTTTGGCTCCAACTCGTGAACTTGCTGTCCAAATACAGCAAGAGGCTACTAAGTTTGGTGCATCATCTAGGATTAAGGGTACATGCATATATGGTGGGGTACCTAAGGGACCTCAGGTGCGGGATCTCCAGAAAGGTGTTGAAATTGTAATTGCTACTCCGGGAAGGTTGATTGACATGCTTGAGTCAAATCATACTAACTTACGAAGAGTTACATACCTTGTATTGGATGAGGCTGATAGAATGTTGGACATGGGCTTTGAGCCTCAGCTACGGAAGATTGTCGCCCAGATTCGTCCAGACCGTCAAACATTATGCTGGAGTGCTACCTGGCCAAAGGAGGTTGAGCAGCTGGCAAGGCAGTCCCTTTATAACCCATACAAAGTGATTATAGGTTCTCCAGATTTAAAAGCTAACCATGCAATACGTCAATATGTTGACATTGTTTCTGAAAAGCAGAAATACGATAAATTGGTGAAGTTGCTGGAGGACATCATGGATGGCAGCAGAATACTGATATTCATGGATACTAAGAAAGGATGTGATCAGATCACCAGGCAGCTCCGCATGGATGGTTGGCCAGCACTTTCAATACATGGAGATAAAAGTCAAGCAGAAAGAGATTGGGTGCTGTCAGAGTTCAGATCCGGAAAGAGTCCTATTATGACTGCAACAGATGTTGCAGCTCGTGGTTTAGATGTGAAGGATGTGATGTATGTAATAAATTACGACTTCCCAGGATCTCTTGAGGACTATGTTCATCGCATTGGTCGGACTGGGAGAGCAGGCGCAAAGGGTACTGCATATACATTCTTTACTGCTGCGAATGCTAGATTCGCAAAGGAACTTATAGGCATACTTGAGGAAGCTGGACAGAAAGTGAGTCCTGAATTGGCAGCAATGGCACGTGGAGCACCTCCTCCACCTTCAGGTTATGGAGGTTTCCGGGGGAGAAGTTATGGTGGTCGCCCATTGAGATGA 1698 0.4653 MLQKGSLCVYVSSSHWSLQYSFRVDKRDAVVEVSLCSPFLPSALAPATSAHRVVANRVRHQRIMSRYDSRSGDPTSYRDRRSDSGLGAPTGYGGSVHSSSSRRDYNDGGSPRKLNLDGLPHFEKNFYIESPEVRAMTEAEVNEYRQKRDITVEGRDVPKPVKSFDLAGFPEYVMQEITKAGFVEPTPIQSQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHINAQPILEPGDGPIVLVLAPTRELAVQIQQEATKFGASSRIKGTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESNHTNLRRVTYLVLDEADRMLDMGFEPQLRKIVAQIRPDRQTLCWSATWPKEVEQLARQSLYNPYKVIIGSPDLKANHAIRQYVDIVSEKQKYDKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFRSGKSPIMTATDVAARGLDVKDVMYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELIGILEEAGQKVSPELAAMARGAPPPPSGYGGFRGRSYGGRPLR 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele43g0433 565 FunFam probable ATP-dependent RNA helicase DDX17 124 371 - -
Lele43g0433 565 MobiDBLite consensus disorder prediction 64 117 - -
Lele43g0433 565 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 140 541 - -
Lele43g0433 565 CDD DEADc_DDX5_DDX17 173 368 - -
Lele43g0433 565 Pfam DEAD/DEAH box helicase 186 357 IPR011545 GO:0003676|GO:0005524
Lele43g0433 565 Pfam Helicase conserved C-terminal domain 393 502 IPR001650 -
Lele43g0433 565 Gene3D - 372 543 IPR027417 -
Lele43g0433 565 SMART ultradead3 181 384 IPR014001 -
Lele43g0433 565 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 234 517 IPR027417 -
Lele43g0433 565 CDD SF2_C_DEAD 381 511 - -
Lele43g0433 565 MobiDBLite consensus disorder prediction 64 80 - -
Lele43g0433 565 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 396 541 IPR001650 -
Lele43g0433 565 SMART helicmild6 421 502 IPR001650 -
Lele43g0433 565 MobiDBLite consensus disorder prediction 541 565 - -
Lele43g0433 565 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 193 368 IPR014001 -
Lele43g0433 565 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 314 322 IPR000629 -
Lele43g0433 565 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 162 190 IPR014014 GO:0003724
Lele43g0433 565 FunFam ATP-dependent RNA helicase RhlB 372 544 - -
Lele43g0433 565 Gene3D - 125 371 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele43g0433 Lele-ChrLele43 3804200 3808554 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele43g0433 150 522 Eukaryotic Initiation Factors Gene Family AT3G19760 33.690 2.23e-73 238