Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele43g0427 ATGCTCTCCTCCATCTCCGCTGTGTGGGGGCCCCAAATTGATGAAACTAGGGATACAAGGAGACAGCTCTTGTACCTTTCTGAACAGGCAAGAATAATAACTGATGGTGAGAGTGCTCCGAACACTCTAGTTATAGCAGAGTGTGAGATTATGAAGCCTAGGGTTGCATCGGAGGATATTAGAAGGTTTGATGAAGACGCTCGCTCCCCCATTATCAGGAAGCAAAAATCCATTATTCACCCCGGAGAGGTGAACAGAATAAGGGAAATGCCACAACATAATAATCTGTTAGTAACACACACAGATACACCTGAGGTAATGATTTGGGATATGGACTCTCAACCAGCTCGCCATGTTATCCCTGGAGCTTCAAATTCCATGCCCACTCTGATACTGGCTGGGCACACAGATGTTGCTCAATTTGCTTTGGCTGTTTCTCCTTCTCAACCCTATGTTCTTTCTGGAGGGAAGGACAAGAATGTTGTGTTATGGAGTGTGAATGACGAAATCACAACTTTAGCAGCGACACCACCCTACTTTAGAATTCCTCCTCGTTTTGGTCGGGATAATTATTATTACAACCCTGTTGTGGCCCCACGTGCCACCTTCGTAGGACACACTGATACTGTTGAGGATGTCGAATTTAACCCCGCAAATCCACAAGAGTTCTGCAGCGTAGGGGACGATTCTAGATTGATCATATGGGATGCGCGTTTTAGGCCAAATTCCGTTCTCAAGGTCGAAGGAGCTCACGACGAAGATATTCACTGTGTCGAATGGAATAAATTCAATACTCATTATATTCTCACTGGTTCTGCTGATAGGTCAGTTCATTTGTATGATCTTCGATTCCTTGTAAATCCCCATGGACGTAATCCTGTTTATACATTCCGGGGACATGACGCTTCTATCCTTTGTGTTCAGTGGTCTCCAGATAAGTCATCCGTATTTGGCACTTCTGGGGATGATGGTGTTGTTAACATTTGGGACTGTCAAAAGGTTGGGAGAGCTTCGTCTTCTGCTGGTCTGGGACAAGAAAGGGCTCCTCCTGGTTTATTCTTTCGACATGTTGGTCATAGGCACAAGGCAATTGAATTCCAGTGGAATCCGTCTGATCCATGGACAATTGTTAGTTTGTCTCATGATTGCAGAGGCCACGGAGGAGGTAACTTACAGATGTGGCGAATGATGGATATAATATATGAAGAGGTTGAGAATGAGGAGAGGAAAATGGCAGAGCTGAATATGTTCAGGCCATGTACCGCGGGGCGAAGCCTATCATCTATCAAGGATTTATGTTTTTGCTTTGCCTAG 1314 0.4498 MLSSISAVWGPQIDETRDTRRQLLYLSEQARIITDGESAPNTLVIAECEIMKPRVASEDIRRFDEDARSPIIRKQKSIIHPGEVNRIREMPQHNNLLVTHTDTPEVMIWDMDSQPARHVIPGASNSMPTLILAGHTDVAQFALAVSPSQPYVLSGGKDKNVVLWSVNDEITTLAATPPYFRIPPRFGRDNYYYNPVVAPRATFVGHTDTVEDVEFNPANPQEFCSVGDDSRLIIWDARFRPNSVLKVEGAHDEDIHCVEWNKFNTHYILTGSADRSVHLYDLRFLVNPHGRNPVYTFRGHDASILCVQWSPDKSSVFGTSGDDGVVNIWDCQKVGRASSSAGLGQERAPPGLFFRHVGHRHKAIEFQWNPSDPWTIVSLSHDCRGHGGGNLQMWRMMDIIYEEVENEERKMAELNMFRPCTAGRSLSSIKDLCFCFA 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele43g0427 437 ProSiteProfiles Trp-Asp (WD) repeats profile. 248 283 IPR001680 GO:0005515
Lele43g0427 437 PANTHER WD40 REPEAT FAMILY 4 406 - -
Lele43g0427 437 SUPERFAMILY WD40 repeat-like 73 396 IPR036322 GO:0005515
Lele43g0427 437 ProSiteProfiles Trp-Asp (WD) repeats profile. 203 236 IPR001680 GO:0005515
Lele43g0427 437 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 203 236 - -
Lele43g0427 437 Pfam WD domain, G-beta repeat 129 165 IPR001680 GO:0005515
Lele43g0427 437 Pfam WD domain, G-beta repeat 201 236 IPR001680 GO:0005515
Lele43g0427 437 Pfam WD domain, G-beta repeat 249 281 IPR001680 GO:0005515
Lele43g0427 437 Pfam WD domain, G-beta repeat 292 330 IPR001680 GO:0005515
Lele43g0427 437 ProSiteProfiles Trp-Asp (WD) repeats profile. 142 174 IPR001680 GO:0005515
Lele43g0427 437 ProSiteProfiles Trp-Asp (WD) repeats profile. 297 330 IPR001680 GO:0005515
Lele43g0427 437 SMART WD40_4 349 395 IPR001680 GO:0005515
Lele43g0427 437 SMART WD40_4 125 165 IPR001680 GO:0005515
Lele43g0427 437 SMART WD40_4 196 236 IPR001680 GO:0005515
Lele43g0427 437 SMART WD40_4 290 330 IPR001680 GO:0005515
Lele43g0427 437 SMART WD40_4 241 281 IPR001680 GO:0005515
Lele43g0427 437 Gene3D - 2 414 IPR015943 GO:0005515
Lele43g0427 437 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 297 330 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele43g0427 Lele-ChrLele43 3766133 3772919 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele41g0969 41 19144441 19150516 Lele43g0427 43 3766133 3772919 hybridization
Lele42g0938 42 22090142 22097287 Lele43g0427 43 3766133 3772919 hybridization