Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele43g0416 ATGAAGGGTTTGATGTTTCACCAGCAACAGCAACAACAAGTAGTGGAAGAGAACATGTCTAATTTGACTTCTGCATCTGGTGAAGCCAGTGTTTCATCAGGCAATAGAAACGAAATTGCTACCAATTATCCTTCACAACAACAATACTTTGCTTCCCCACCAACTCAAACTCAAACTCAGCCCCTGAAGAAAAAGAGAAACCTTCCTGGAAACCCAGACCCAGATGCTGAAGTTATAGCCTTGTCTCCAAAGAGTCTTCTGGCGACAAACAGGTTCATATGTGAGATCTGCAACAAAGGATTTCAAAGAGACCAGAATCTGCAACTTCATAGAAGAGGGCACAATCTGCCATGGAAGCTGAAGCAGAGAACAAACAAAGAGGTGAGGAAGAAGGTGTATGTGTGCCCAGAACCCGCATGTGTGCACCATGACCCAGCAAGAGCACTTGGGGACCTAACTGGGATAAAGAAGCACTTCTGCAGAAAGCATGGTGAAAAGAAGTGGAAATGTGACAAGTGCTCCAAGAGGTATGCAGTTCAATCGGATTGGAAAGCTCACTCCAAGACCTGTGGCACAAGAGAGTACAGATGTGACTGTGGAACCCTCTTCTCAAGGTAA 618 0.4515 MKGLMFHQQQQQQVVEENMSNLTSASGEASVSSGNRNEIATNYPSQQQYFASPPTQTQTQPLKKKRNLPGNPDPDAEVIALSPKSLLATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYVCPEPACVHHDPARALGDLTGIKKHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKTCGTREYRCDCGTLFSR 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele43g0416 205 Gene3D Classic Zinc Finger 72 139 - -
Lele43g0416 205 ProSitePatterns Zinc finger C2H2 type domain signature. 94 114 IPR013087 -
Lele43g0416 205 MobiDBLite consensus disorder prediction 1 65 - -
Lele43g0416 205 SUPERFAMILY beta-beta-alpha zinc fingers 91 188 IPR036236 -
Lele43g0416 205 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 42 205 IPR031140 -
Lele43g0416 205 SMART c2h2final6 92 114 IPR013087 -
Lele43g0416 205 SMART c2h2final6 133 163 IPR013087 -
Lele43g0416 205 SMART c2h2final6 168 188 IPR013087 -
Lele43g0416 205 MobiDBLite consensus disorder prediction 1 73 - -
Lele43g0416 205 FunFam protein indeterminate-domain 12-like 71 139 - -
Lele43g0416 205 Pfam Zinc-finger double-stranded RNA-binding 92 114 IPR022755 -
Lele43g0416 205 ProSiteProfiles Zinc finger C2H2 type domain profile. 92 114 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele43g0416 Lele-ChrLele43 3689660 3690410 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele43g0416 2 205 IDZ Gene Family AT1G55110 75.598 3.40e-106 311
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele43g0416 zf-C2H2_jaz 2.3e-05 CL0361