Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lele43g0404 | ATGGGTGGTTCTGGAAAGTGGTTGAAGTCACTCATTCCTTCAAAAAAGCCCTCCCCAAATGATCGTCAAAATACTGGTGCTTATAAGAGCAAGAAGAAATGGAAGCTATGGAGGAACTCTTCTGAGAGGATGGGATCATCCACGAAAGGAACGACGAAGAAAAGAAACGGGGTCGTATCAGACAAGTCGGACTCTCTGTCGAATGATGCATTTACTGCCGCTATGGCTGCTGTGGTCCGAGCTCCTCCCAAAGGTTTCTTGTTGATCAAACAGGAATGGGCTGCCATTCGCATTCAGGCTCCGTTTCGAGGATTCTTGGCAAGACGAGCTTTGAGGGCCTTAAGGGCAGTGGTGAGGATTCAAGCTATATTTCGAGGGAGGCAAGTGAGGAAGAAAGCAGCAGTAACTCTGAGGTGCATGCAGGCTCTTGTCAGAGTTCAGGCTCGTGTGAAAGCAAGGAGTGTGAGCATGTATCCAGACAGAAAGCACTCTCAAGATAATTCTCTTAAGCAGACTGAGAGAGGATGGTGTAACATTCCAGGAAGTGTAGATGAAGTCAAAGCAAAGCTTCAACTGAGACAAGAAGCTTCCATCAAAAGAGAGAGAACAATGGCATACTCTCTCTCTACACAGCAATCAAGAGGGAGTGCTAGTCCAAACTCAAGAATTTCATCAAGGCCAGTGTCTCCACGGAAGCATGACAATCTAGACAGTAGGAGCTTGTTAGAGCGGTGGATGGCAGCGAAGCCATGGGAAAACAGGTTGAAGTCAGAGAGATACTTTGATTCGCCGGACCGGACTCCATTATCAAGGAAAAGTGATAACTTTGTTCTCCCAAGAGCAAGAAAGAATGCTGTGACAACCAGGGTTTCACTAAAACCTCCCATGACCAGCTTATCAGCTCCATCATCATTATCATCATCTTCTGCTATAAGTTCTGAATGTATGTATGATGACAGCCCGCTTTCAGCTTCATGCACCTCCCCCGAGGACAAGCGCGTTCCTAAACCAAGCTTCATGAATTTCACCGAGTCAACCAAGGCTAAACAGAGAGCTTGCAAGTGTCCCTCTCTGAATGGAGATGCTAGAAGCACCACTTCAGGTTCTGATCCTTCTGTTAATTTTTGGAGAGACTGTTATGCAACTCCTCAAAGGGCAAGTTATCAGAGAAGATCCTCCAAAAGATGA | 1188 | 0.463 | MGGSGKWLKSLIPSKKPSPNDRQNTGAYKSKKKWKLWRNSSERMGSSTKGTTKKRNGVVSDKSDSLSNDAFTAAMAAVVRAPPKGFLLIKQEWAAIRIQAPFRGFLARRALRALRAVVRIQAIFRGRQVRKKAAVTLRCMQALVRVQARVKARSVSMYPDRKHSQDNSLKQTERGWCNIPGSVDEVKAKLQLRQEASIKRERTMAYSLSTQQSRGSASPNSRISSRPVSPRKHDNLDSRSLLERWMAAKPWENRLKSERYFDSPDRTPLSRKSDNFVLPRARKNAVTTRVSLKPPMTSLSAPSSLSSSSAISSECMYDDSPLSASCTSPEDKRVPKPSFMNFTESTKAKQRACKCPSLNGDARSTTSGSDPSVNFWRDCYATPQRASYQRRSSKR | 395 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lele43g0404 | 395 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 86 | 133 | IPR027417 | - | |
| Lele43g0404 | 395 | PANTHER | IQ-DOMAIN 5-RELATED | 1 | 369 | - | - | |
| Lele43g0404 | 395 | MobiDBLite | consensus disorder prediction | 40 | 54 | - | - | |
| Lele43g0404 | 395 | MobiDBLite | consensus disorder prediction | 203 | 226 | - | - | |
| Lele43g0404 | 395 | MobiDBLite | consensus disorder prediction | 1 | 64 | - | - | |
| Lele43g0404 | 395 | MobiDBLite | consensus disorder prediction | 359 | 373 | - | - | |
| Lele43g0404 | 395 | SMART | iq_5 | 113 | 134 | IPR000048 | GO:0005515 | |
| Lele43g0404 | 395 | SMART | iq_5 | 90 | 112 | IPR000048 | GO:0005515 | |
| Lele43g0404 | 395 | ProSiteProfiles | IQ motif profile. | 91 | 119 | IPR000048 | GO:0005515 | |
| Lele43g0404 | 395 | Pfam | IQ calmodulin-binding motif | 93 | 112 | IPR000048 | GO:0005515 | |
| Lele43g0404 | 395 | Pfam | IQ calmodulin-binding motif | 115 | 132 | IPR000048 | GO:0005515 | |
| Lele43g0404 | 395 | MobiDBLite | consensus disorder prediction | 322 | 374 | - | - | |
| Lele43g0404 | 395 | MobiDBLite | consensus disorder prediction | 202 | 235 | - | - | |
| Lele43g0404 | 395 | Gene3D | - | 89 | 143 | - | - | |
| Lele43g0404 | 395 | ProSiteProfiles | IQ motif profile. | 115 | 142 | IPR000048 | GO:0005515 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lele43g0404 | Lele-ChrLele43 | 3585978 | 3588284 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lele43g0404 | 1 | 384 | IQD Protein Family | AT1G72670 | 46.793 | 1.89e-92 | 282 |