Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele43g0397 ATGGAGCCTCGAGTAGGGAACAAATTTCGTCTTGGCCGGAAGATTGGTAGCGGATCGTTTGGGGAGATCTATCTTGGTACTAATATTCAGACAAATGAAGAGGTCGCAATTAAGCTCGAAAATGTCAAGACCAAACACCCTCAGCTGTTGTATGAATCGAAGCTGTATAAAATACTGCAAGGAGGAACTGGAATCCCAAATGTTAGATGGTTTGGTGTTGAAGGAGACTACAATGTGCTTGTGATGGATTTACTGGGGCCCAGTCTTGAAGATTTATTCAATTTTTGTGGTCGGAAATTGTCATTGAAAACTGTTGTAATGCTTGCTGATCAGATGATAAATCGAGTTGAATTTGTTCATTCAAAATCGTTTTTACATCGGGACATCAAGCCAGACAACTTTCTCATGGGTTTAGGAAGGCGTGCAAATCAGGTATACATCATTGACTTTGGTCTTGCAAAGAAATACAGAGACACTTCTACCCACCAGCATATTCCTTACAGAGAAAATAAGAATTTGACAGGAACTGCTAGATATGCTAGTATGAATACTCATCTTGGAATTGAGCAAAGTCGCAGGGATGACTTAGAGTCACTTGGATACGTTCTTATGTACTTTTTAAGGGGAAGTCTTCCTTGGCAGGGACTGAAAGCAGGTAATAAGAAGCAGAAGTATGAGAAGATCAGTGAGAAGAAAGTTTCTACTTCTATTGAGTCTCTCTGTCGTGGGTATCCCTCAGAATTTGCATCATACTTCCACTACTGCCGGTCTCTGCGTTTTGATGATAAGCCAGATTATGCTTATCTGAAAAGACTTTTCCGTGACCTTTTCATTCGGGAAGGATTCCAGTTTGATTATGTCTTTGATTGGACCATTTTGAAATATCAGCAATCCCATATTGCTACTCCTCCCGGGCGTGCTATTGTTCCTGGTGCTGGACCAAGTTCTGGCATGCCACCAATTGTTGCAAATGCTGATAGACATTCAGGCGGGGAAGATGGCAGACACACTGGTTGGTCTTTGTCAGATCCTACTCGTAGGAGAAATTCAGGACCTACTGCAAATGATGTAAGCTTGTCTAGACAAAAAGCCCCAGTTCCAAGTGACTCAAATATATCAAAAGATGGAATGTTGTCTGGTTCTAATTTTTTCCGCCCAAGCGGATCCTCAAGGCGAGCTGCTGTCTCTAGCAGCCGGGATGCAGCTACTGTTGGCAGTGAGACTGAGCCCTCTCGCTCTCTTGCTGTTGATGCAAGTCCCGGAGTACTCCGTAAAATCGCTGGTGCTCAAAGAAGTTCTCCTCTTGTATCAGCGGAGCAGATCAGAACATCATCTAGCAGGAGCCCGGCAAACATCAAGAATTTTGAGTCTACTCTGAGAGGCATTGATAGCTTGCATTTCAATGACGAAAGGGTACAATACTAG 1425 0.4316 MEPRVGNKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTKHPQLLYESKLYKILQGGTGIPNVRWFGVEGDYNVLVMDLLGPSLEDLFNFCGRKLSLKTVVMLADQMINRVEFVHSKSFLHRDIKPDNFLMGLGRRANQVYIIDFGLAKKYRDTSTHQHIPYRENKNLTGTARYASMNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGNKKQKYEKISEKKVSTSIESLCRGYPSEFASYFHYCRSLRFDDKPDYAYLKRLFRDLFIREGFQFDYVFDWTILKYQQSHIATPPGRAIVPGAGPSSGMPPIVANADRHSGGEDGRHTGWSLSDPTRRRNSGPTANDVSLSRQKAPVPSDSNISKDGMLSGSNFFRPSGSSRRAAVSSSRDAATVGSETEPSRSLAVDASPGVLRKIAGAQRSSPLVSAEQIRTSSSRSPANIKNFESTLRGIDSLHFNDERVQY 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele43g0397 474 MobiDBLite consensus disorder prediction 430 449 - -
Lele43g0397 474 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Lele43g0397 474 Pfam Protein kinase domain 10 226 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele43g0397 474 SUPERFAMILY Protein kinase-like (PK-like) 5 290 IPR011009 -
Lele43g0397 474 MobiDBLite consensus disorder prediction 328 342 - -
Lele43g0397 474 PANTHER CASEIN KINASE-RELATED 9 384 - -
Lele43g0397 474 MobiDBLite consensus disorder prediction 343 413 - -
Lele43g0397 474 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Lele43g0397 474 FunFam Casein kinase I isoform delta-like 1 308 - -
Lele43g0397 474 ProSiteProfiles Protein kinase domain profile. 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele43g0397 474 Gene3D Transferase(Phosphotransferase) domain 1 1 305 - -
Lele43g0397 474 SMART serkin_6 9 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele43g0397 474 MobiDBLite consensus disorder prediction 433 449 - -
Lele43g0397 474 FunFam Putative Casein kinase I 1 85 - -
Lele43g0397 474 MobiDBLite consensus disorder prediction 309 415 - -
Lele43g0397 474 CDD STKc_CK1_delta_epsilon 8 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele43g0397 Lele-ChrLele43 3541360 3545623 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele43g0397 8 213 MAP Kinase Kinase Kinase AT3G06030 27.727 1.18e-13 71.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Lele43g0397 Pkinase 1.9e-27 CL0016